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AT1G70100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3037 Blast hits to 2309 proteins in 344 species: Archae - 6; Bacteria - 672; Metazoa - 1089; Fungi - 230; Plants - 220; Viruses - 37; Other Eukaryotes - 783 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JD5DeggNOG:ENOG410YW3EEMBL:AY039960EMBL:AY079401EMBL:CP002684EnsemblPlants:AT1G70100EnsemblPlants:AT1G70100.1
EnsemblPlants:AT1G70100.2entrez:843346ExpressionAtlas:Q94BQ6GeneID:843346Gramene:AT1G70100.1Gramene:AT1G70100.2hmmpanther:PTHR31358
hmmpanther:PTHR31358:SF6HOGENOM:HOG000090023IntAct:Q94BQ6PhylomeDB:Q94BQ6Proteomes:UP000006548RefSeq:NP_564984.1RefSeq:NP_849871.2
TAIR:AT1G70100UniGene:At.10306UniProt:Q94BQ6
Coordinates (TAIR10) chr1:+:26403736..26405544
Molecular Weight (calculated) 51991.30 Da
IEP (calculated) 9.23
GRAVY (calculated) -0.87
Length 467 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDMEVGIAS GEDKITTAAS SNQELQVSVS FGKFENDSLS WEKFSSFSPN KYLEEVEKCA TAGSVAQKKA YFESHYKKIA ERRADIIMEQ EKLLERNASF
101: RPNIQNRERT DDSDNDESMM IEFSTGYGSN GESTSEEDKL VTVIVTEVNE TCNHKPLEET MDFKECRSSV DTGDDLSTLK LEEKLEEIVQ VEDKEKVEEV
201: ICMKEEVKED VPSKDTGEMS ETLMKETKKE KDHNPIKKTD KNVRTNHMRA SPKSNQVTKK PVTSKVVSGR KTQPSKEKSM TKATNKAASP VLKPPGFSTP
301: RVSKSASTIS SMSTSRSSVK KESVSTLLRK KQTAPKSLPI SLNVDQSVSD PTAVPTTRKS LIMERMGDKD IVRRAFKSFQ KSFDQMKSTD DGQDTAPKQV
401: LAKATAVQRL GTTGQKNVRL AKSDGTERKG PNSHRSSSVV SKSNGTAEKQ KDVRCFMSKP NHVHLIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)