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AT1G70040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.927
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1163)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1163); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1163 (InterPro:IPR009544); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1163) (TAIR:AT1G70120.1); Has 41 Blast hits to 41 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUS4eggNOG:ENOG41106KXEMBL:AC002062EMBL:CP002684EMBL:DQ446417EnsemblPlants:AT1G70040EnsemblPlants:AT1G70040.1
entrez:843341GeneID:843341GO:GO:0016021Gramene:AT1G70040.1hmmpanther:PTHR31125hmmpanther:PTHR31125:SF4InterPro:IPR009544
KEGG:ath:AT1G70040OMA:QNITMTRPANTHER:PTHR31125Pfam:PF06651PhylomeDB:O04540PIR:B96723PIRSF:PIRSF026169
Proteomes:UP000006548RefSeq:NP_177162.1TAIR:AT1G70040TMHMM:TMhelixUniGene:At.52457UniProt:O04540
Coordinates (TAIR10) chr1:+:26381233..26381908
Molecular Weight (calculated) 21598.30 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.02
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MADEELSIGV RIFVSFLIAF GICGLVLLMI KDNSGKIPVP KIELASMDFT VQNITMTRLN AKWDLSIRIP DDLPGKYICL QGDLEASLLY KNVTLATSSP
101: QKYYNLKYFN PQLLKISANV SEVDIGGLIG KNIINDVKER KEVHFGSRFS LTDCREKTTG VMSYECDEAT LRFEPSSEMK ATMFGDHPNC INV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)