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AT1G70000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb-like transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT5G47390.1); Has 1401 Blast hits to 1395 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1215; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXSSeggNOG:ENOG4111BIBEMBL:AC002062EMBL:AK227711EMBL:AY519509EMBL:BT006413EMBL:CP002684
EnsemblPlants:AT1G70000EnsemblPlants:AT1G70000.1EnsemblPlants:AT1G70000.2entrez:843337Gene3D:1.10.10.60GeneID:843337GO:GO:0003677
GO:GO:0003682GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008270GO:GO:0009651
GO:GO:0009723GO:GO:0009733GO:GO:0009737GO:GO:0009739GO:GO:0009751GO:GO:0009753GO:GO:0031540
GO:GO:0046686GO:GO:0080167Gramene:AT1G70000.1Gramene:AT1G70000.2hmmpanther:PTHR12374hmmpanther:PTHR12374:SF26HOGENOM:HOG000237594
InterPro:IPR001005InterPro:IPR001878InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G70000OMA:NLSQFDQ
Pfam:PF00249Pfscan:PS50158Pfscan:PS51294PhylomeDB:O04544PIR:F96722PROSITE:PS50158PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_001185359.1RefSeq:NP_177158.1SMART:SM00717SMR:O04544SUPFAM:SSF46689TAIR:AT1G70000
TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.35354UniGene:At.67206UniProt:O04544
Coordinates (TAIR10) chr1:-:26363674..26364635
Molecular Weight (calculated) 28794.70 Da
IEP (calculated) 10.58
GRAVY (calculated) -0.89
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRSCSQCGN NGHNSRTCPT DITTTGDNND KGGGEKAIML FGVRVTEASS SCFRKSVSMN NLSQFDQTPD PNPTDDGGYA SDDVVHASGR NRERKRGTPW
101: TEEEHRLFLT GLHKVGKGDW RGISRNFVKT RTPTQVASHA QKYFLRRTNQ NRRRRRSSLF DITPDSFIGS SKEENQLQTP LELIRPVPIP IPIPPSRKMA
201: DLNLNKKKTP ATTEMFPLSL NLQRPSSSTS SSSNEQKARG SRASSGFEAM SSNGDSIMGV A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)