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AT1G69840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:32219438 (2020): cytosol
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:27936405 (2017): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:19000159 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
  • PMID:15028209 (2004): plastid
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SPFH/Band 7/PHB domain-containing membrane-associated protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5669 Blast hits to 5668 proteins in 1821 species: Archae - 158; Bacteria - 3805; Metazoa - 307; Fungi - 277; Plants - 271; Viruses - 5; Other Eukaryotes - 846 (source: NCBI BLink).
Protein Annotations
BioGrid:28541DNASU:843320eggNOG:COG0330eggNOG:KOG2620
EMBL:AC010675EMBL:AK317238EMBL:AY099840EMBL:BT000336
EMBL:CP002684EnsemblPlants:AT1G69840EnsemblPlants:AT1G69840.1EnsemblPlants:AT1G69840.2
EnsemblPlants:AT1G69840.3EnsemblPlants:AT1G69840.4EnsemblPlants:AT1G69840.5EnsemblPlants:AT1G69840.6
EnsemblPlants:AT1G69840.7entrez:843320GeneID:843320Genevisible:Q9CAR7
GO:GO:0005773GO:GO:0005774GO:GO:0005886GO:GO:0009506
GO:GO:0009507GO:GO:0043424Gramene:AT1G69840.1Gramene:AT1G69840.2
Gramene:AT1G69840.3Gramene:AT1G69840.4Gramene:AT1G69840.5Gramene:AT1G69840.6
Gramene:AT1G69840.7hmmpanther:PTHR10264hmmpanther:PTHR10264:SF93HOGENOM:HOG000035168
InParanoid:Q9CAR7IntAct:Q9CAR7InterPro:IPR001107InterPro:IPR001972
iPTMnet:Q9CAR7KEGG:ath:AT1G69840ncoils:CoilOMA:IQVDQSN
PANTHER:PTHR10264PaxDb:Q9CAR7Pfam:PF01145Pfam:Q9CAR7
PhylomeDB:Q9CAR7PIR:F96720PRIDE:Q9CAR7PRO:PR:Q9CAR7
ProteinModelPortal:Q9CAR7Proteomes:UP000006548RefSeq:NP_001077802.1RefSeq:NP_001077803.1
RefSeq:NP_001185358.1RefSeq:NP_177142.1RefSeq:NP_849870.1RefSeq:NP_974116.1
RefSeq:NP_974117.1SMART:SM00244STRING:3702.AT1G69840.1SUPFAM:0050593
SUPFAM:SSF117892SwissPalm:Q9CAR7TAIR:AT1G69840UniGene:At.23548
UniGene:At.28156UniProt:Q9CAR7
Coordinates (TAIR10) chr1:-:26293932..26295150
Molecular Weight (calculated) 31407.40 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.22
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)