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AT1G69800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.847
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cystathionine beta-synthase (CBS) protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cystathionine beta-synthase (CBS) protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: SNF1-related protein kinase regulatory subunit gamma 1 (TAIR:AT3G48530.1); Has 879 Blast hits to 799 proteins in 237 species: Archae - 117; Bacteria - 170; Metazoa - 187; Fungi - 63; Plants - 180; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0517eggNOG:KOG1764EMBL:AC010675EMBL:AK317462EMBL:BT033072EMBL:CP002684EnsemblPlants:AT1G69800
EnsemblPlants:AT1G69800.1EnsemblPlants:AT1G69800.2entrez:843316ExpressionAtlas:Q9CAR3GeneID:843316Genevisible:Q9CAR3GO:GO:0005975
hmmpanther:PTHR13780hmmpanther:PTHR13780:SF47HOGENOM:HOG000238005InParanoid:Q9CAR3InterPro:IPR000644KEGG:ath:AT1G69800OMA:LDWRERY
PaxDb:Q9CAR3Pfam:PF00571Pfam:Q9CAR3Pfscan:PS51371PhylomeDB:Q9CAR3PIR:B96720PRIDE:Q9CAR3
PRO:PR:Q9CAR3PROSITE:PS51371ProteinModelPortal:Q9CAR3Proteomes:UP000006548RefSeq:NP_001077801.1RefSeq:NP_564975.2SMART:SM00116
SMR:Q9CAR3STRING:3702.AT1G69800.2SUPFAM:SSF54631TAIR:AT1G69800UniGene:At.18237UniProt:Q9CAR3
Coordinates (TAIR10) chr1:-:26274416..26276105
Molecular Weight (calculated) 47820.50 Da
IEP (calculated) 5.00
GRAVY (calculated) 0.15
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGSEAVEDK EIKSAVSSCE AYFEKVQSRK NLPKSLQETL NSAFAGIPVS SFPQVPGGRV IEIQAETPVS EAVKILSDSK ILSAPVINTD HESSLDWRER
101: YLGIIDYSSI ILWVLESAEL AAIALSATSA TAAGVGAGAV GALGVAALGM TGPVAAAGLA AAAVGAAVAG GVAAERGIGK DAPTAADKLG KDFYEVILQE
201: EPFKSTTVRT ILKSFRWAPF LPVSTESSML SVMLLLSKYR LRNVPVIKTG EPDIKNYVTQ SAVVHGLEGC KGRDWFDHIS ALPISDLGLP FMSPNEVISI
301: ESEELILEAF KRMRDNNIGG LPVVEGLNKK IVGNISMRDI RYLLLQPEVF SNFRQLTVKS FATKIATAGE EYGLAIPAIT CRPDSTLGSV INSLASRSVH
401: RVYVAAGDEN ELYGVITLRD VISCFVSEPP NYFENCLGFS VKEMLNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)