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AT1G69780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeobox-leucine zipper protein family
Curator
Summary (TAIR10)
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational
Description (TAIR10)
ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
Protein Annotations
BioGrid:28535eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AC013289
EMBL:AF208044EMBL:AY057572EMBL:AY086888EMBL:AY133645
EMBL:CP002684EnsemblPlants:AT1G69780EnsemblPlants:AT1G69780.1entrez:843314
Gene3D:1.10.10.60GeneID:843314Genevisible:Q8LC03GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009744GO:GO:0009965
GO:GO:0043565GO:GO:0048826GO:GO:0080022Gramene:AT1G69780.1
hmmpanther:PTHR24326hmmpanther:PTHR24326:SF176HOGENOM:HOG000006025InParanoid:Q8LC03
InterPro:IPR000047InterPro:IPR001356InterPro:IPR003106InterPro:IPR009057
InterPro:IPR017970KEGG:ath:AT1G69780KO:K09338ncoils:Coil
OMA:DSPLSNHPaxDb:Q8LC03Pfam:PF00046Pfam:PF02183
Pfam:Q8LC03Pfscan:PS50071PhylomeDB:Q8LC03PIR:H96719
PRIDE:Q8LC03PRINTS:PR00031PRO:PR:Q8LC03PROSITE:PS00027
PROSITE:PS50071ProteinModelPortal:Q8LC03Proteomes:UP000006548RefSeq:NP_177136.1
scanprosite:PS00027SMART:SM00389SMR:Q8LC03STRING:3702.AT1G69780.1
SUPFAM:SSF46689TAIR:AT1G69780tair10-symbols:ATHB13UniGene:At.23736
UniGene:At.68137UniProt:Q8LC03
Coordinates (TAIR10) chr1:+:26259166..26260465
Molecular Weight (calculated) 33343.80 Da
IEP (calculated) 5.40
GRAVY (calculated) -0.95
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)