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AT1G69690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TCP family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TCP family transcription factor ; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (TAIR:AT3G47620.1); Has 863 Blast hits to 861 proteins in 131 species: Archae - 0; Bacteria - 6; Metazoa - 120; Fungi - 15; Plants - 698; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
BioGrid:28526eggNOG:ENOG410JBBCeggNOG:ENOG410YBA4EMBL:AC013289EMBL:AY056384EMBL:AY081706EMBL:CP002684
EnsemblPlants:AT1G69690EnsemblPlants:AT1G69690.1entrez:843305GeneID:843305Genevisible:Q9C9L2GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0007623GO:GO:0008283GO:GO:0009735GO:GO:0010229
GO:GO:0010252GO:GO:0031540GO:GO:0042023GO:GO:0048467Gramene:AT1G69690.1hmmpanther:PTHR31072hmmpanther:PTHR31072:SF33
HOGENOM:HOG000241759InParanoid:Q9C9L2IntAct:Q9C9L2InterPro:IPR005333InterPro:IPR017887KEGG:ath:AT1G69690OMA:HHSADAY
PaxDb:Q9C9L2Pfam:PF03634Pfam:Q9C9L2Pfscan:PS51369PhylomeDB:Q9C9L2PIR:G96718PRIDE:Q9C9L2
PRO:PR:Q9C9L2PROSITE:PS51369ProteinModelPortal:Q9C9L2Proteomes:UP000006548RefSeq:NP_564973.1STRING:3702.AT1G69690.1TAIR:AT1G69690
UniGene:At.23272UniGene:At.67300UniProt:Q9C9L2
Coordinates (TAIR10) chr1:+:26216449..26217426
Molecular Weight (calculated) 34754.70 Da
IEP (calculated) 7.76
GRAVY (calculated) -0.77
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)