AT1G69580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 1694 Blast hits to 1678 proteins in 70 species: Archae - 0; Bacteria - 6; Metazoa - 10; Fungi - 0; Plants - 1653; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26172127..26173612 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37898.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||
| Length | 336 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCLLMEINNN ANNTNTTIDN HKAKMSLVLS TDAKPRLKWT CDLHHKFIEA VNQLGGPNKA TPKGLMKVME IPGLTLYHLK SHLQKYRLGK SMKFDDNKLE 101: VSSASENQEV ESKNDSRDLR GCSVTEENSN PAKEGLQITE ALQMQMEVQK KLHEQIEVQR HLQVKIEAQG KYLQSVLMKA QQTLAGYSSS NLGMDFARTE 201: LSRLASMVNR GCPSTSFSEL TQVEEEEEGF LWYKKPENRG ISQLRCSVES SLTSSETSET KLDTDNNLNK SIELPLMEIN SEVMKGKKRS INDVVCVEQP 301: LMKRAFGVDD DEHLKLSLNT YKKDMEACTN IGLGFN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)