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AT1G69570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT1G26790.1); Has 1305 Blast hits to 1151 proteins in 75 species: Archae - 0; Bacteria - 6; Metazoa - 16; Fungi - 10; Plants - 1107; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSR7eggNOG:ENOG41108JUEMBL:AC021046EMBL:AC073178
EMBL:AF079504EMBL:AK176346EMBL:BT025623EMBL:CP002684
EnsemblPlants:AT1G69570EnsemblPlants:AT1G69570.1entrez:843293GeneID:843293
Genevisible:Q9SEZ3GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009908GO:GO:0046872
Gramene:AT1G69570.1hmmpanther:PTHR31089hmmpanther:PTHR31089:SF1HOGENOM:HOG000239772
InParanoid:Q9SEZ3InterPro:IPR003851KEGG:ath:AT1G69570OMA:PRYFCRN
PaxDb:Q9SEZ3Pfam:PF02701Pfam:Q9SEZ3Pfscan:PS50884
PhylomeDB:Q9SEZ3PIR:D96717PIR:T51953PRIDE:Q9SEZ3
PRO:PR:Q9SEZ3ProDom:PD007478PROSITE:PS01361PROSITE:PS50884
ProteinModelPortal:Q9SEZ3Proteomes:UP000006548RefSeq:NP_177116.1scanprosite:PS01361
STRING:3702.AT1G69570.1TAIR:AT1G69570UniGene:At.10732UniProt:Q9SEZ3
Coordinates (TAIR10) chr1:-:26161771..26163230
Molecular Weight (calculated) 44008.80 Da
IEP (calculated) 8.82
GRAVY (calculated) -0.85
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKSRDTEIK LFGRTITSLL DVNCYDPSSL SPVHDVSSDP SKEDSSSSSS SCSPTIGPIR VPVKKSEQES NKFKDPYILS DLNEPPKAVS EISSPRSSKN
101: NCDQQSEITT TTTTSTTSGE KSTALKKPDK LIPCPRCESA NTKFCYYNNY NVNQPRYFCR NCQRYWTAGG SMRNVPVGSG RRKNKGWPSS NHYLQVTSED
201: CDNNNSGTIL SFGSSESSVT ETGKHQSGDT AKISADSVSQ ENKSYQGFLP PQVMLPNNSS PWPYQWSPTG PNASFYPVPF YWGCTVPIYP TSETSSCLGK
301: RSRDQTEGRI NDTNTTITTT RARLVSESLR MNIEASKSAV WSKLPTKPEK KTQGFSLFNG FDTKGNSNRS SLVSETSHSL QANPAAMSRA MNFRESMQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)