AT1G69550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class) | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 8455 Blast hits to 8197 proteins in 261 species: Archae - 0; Bacteria - 113; Metazoa - 3; Fungi - 4; Plants - 8303; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26148836..26153374 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 155211.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.99 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1400 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLMDSSFFLT IVAAAFAIGF FIFLRKLRIH QENEDVGSSS TSPPSSLASS TSPPSTLSSS TSHPSSSTSP PSSLSCTGTH HVFPSFRGDD VRRNFLSHIQ 0101: KEFRRKGITP FIDNEIRRGE SIGPELIKAI RESKIAIVLL SRNYASSKWC LEELVEIMKC KKEFGLTVFA IFYEVDPSHV KKLTGEFGAV FQKTCKGRTK 0201: ENIMRWRQAF EEVATIAGYD SRNWENEAAM IEEIAIEISK RLINSSPFSG FEGLIGMKAH IEKMKQLLCL DSTDERRTVG ISGPSGIGKS TIARVLHNQI 0301: SDGFQMSVFM KFKPSYTRPI CSDDHDVKLQ LEQQFLAQLI NQEDIKIHQL GTAQNFVMGK KVLIVLDGVD QLVQLLAMPK AVCLGPGSRI IITTQDQQLL 0401: KAFQIKHIYN VDFPPDHEAL QIFCIHAFGH DSPDDGFEKL ATKVTRLAGN LPLGLRVMGS HFRGMSKEDW KGELPRLRIR LDGEIGSILK FSYDVLDDED 0501: KDLFLHIACF FNDEGIDHTF EDTLRHKFSN VQRGLQVLVQ RSLISEDLTQ PMHNLLVQLG REIVRNQSVY EPGKRQFLVD GKEICEVLTS HTGSESVIGI 0601: NFEVYWSMDE LNISDRVFEG MSNLQFFRFD ENSYGRLHLP QGLNYLPPKL RILHWDYYPM TSLPSKFNLK FLVKIILKHS ELEKLWEGIQ PLVNLKVMDL 0701: RYSSHLKELP NLSTAINLLE MVLSDCSSLI ELPSSIGNAT NIKSLDIQGC SSLLKLPSSI GNLITLPRLD LMGCSSLVEL PSSIGNLINL PRLDLMGCSS 0801: LVELPSSIGN LINLEAFYFH GCSSLLELPS SIGNLISLKI LYLKRISSLV EIPSSIGNLI NLKLLNLSGC SSLVELPSSI GNLINLKKLD LSGCSSLVEL 0901: PLSIGNLINL QELYLSECSS LVELPSSIGN LINLKTLNLS ECSSLVELPS SIGNLINLQE LYLSECSSLV ELPSSIGNLI NLKKLDLSGC SSLVELPLSI 1001: GNLINLKTLN LSECSSLVEL PSSIGNLINL QELYLSECSS LVELPSSIGN LINLKKLDLS GCSSLVELPL SIGNLINLKT LNLSGCSSLV ELPSSIGNLN 1101: LKKLDLSGCS SLVELPSSIG NLINLKKLDL SGCSSLVELP LSIGNLINLQ ELYLSECSSL VELPSSIGNL INLQELYLSE CSSLVELPSS IGNLINLKKL 1201: DLNKCTKLVS LPQLPDSLSV LVAESCESLE TLACSFPNPQ VWLKFIDCWK LNEKGRDIIV QTSTSNYTML PGREVPAFFT YRATTGGSLA VKLNERHCRT 1301: SCRFKACILL VRKGDKIDCE EWGSVYLTVL EKQSGRKYSL ESPTLYPLLT EHLYTFEIEA KGVKSVELVI KFQFGRKKWE IGECGIRPLL EEDTHVESSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)