suba logo
AT1G69420.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.956
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT4G15080.1); Has 4875 Blast hits to 4868 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 2148; Fungi - 657; Plants - 848; Viruses - 0; Other Eukaryotes - 1222 (source: NCBI BLink).
Protein Annotations
BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273eggNOG:KOG1311EMBL:AC018364EMBL:AC073178EMBL:BX814193
EMBL:CP002684EnsemblPlants:AT1G69420EnsemblPlants:AT1G69420.1EnsemblPlants:AT1G69420.2entrez:843274GeneID:843274Genevisible:Q9C533
GO:GO:0005886GO:GO:0008270GO:GO:0016021GO:GO:0019706GO:GO:0030659Gramene:AT1G69420.1Gramene:AT1G69420.2
hmmpanther:PTHR22883hmmpanther:PTHR22883:SF96HOGENOM:HOG000242421InParanoid:Q9C533IntAct:Q9C533InterPro:IPR001594KEGG:ath:AT1G69420
OMA:IIVVATCPaxDb:Q9C533Pfam:PF01529Pfam:Q9C533Pfscan:PS50216PhylomeDB:Q9C533PRIDE:Q9C533
PRO:PR:Q9C533PROSITE:PS50216ProteinModelPortal:Q9C533Proteomes:UP000006548RefSeq:NP_177101.2RefSeq:NP_974114.1STRING:3702.AT1G69420.1
TAIR:AT1G69420TMHMM:TMhelixUniGene:At.35423UniProt:Q9C533
Coordinates (TAIR10) chr1:+:26093690..26096736
Molecular Weight (calculated) 65893.40 Da
IEP (calculated) 8.86
GRAVY (calculated) -0.18
Length 596 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKHGWQLPY HPLQVVAVAV FLALGFAFYV FFAPFVGKKI HQYIAMGIYT PLITCVVGLY IWCAASDPAD RGVFRSKKYL KIPENGKFPL AKDIKDGCGS
101: ATGGAKSHDG TCVEDTENGS NKKLESSERS SLLRLLCSPC ALLCSCCSGK DESSEQMSED GMFYCSLCEV EVFKYSKHCR VCDKCVDRFD HHCRWLNNCI
201: GKRNYRKFFS LMVSAIFLLI MQWSTGIFVL VLCLLRRNQF NADIALKLGS SFSLIPFVIV VGVCTVLAML ATLPLAQLFF FHILLIKKGI STYDYIVALR
301: EQEQELEAGG GQQSPQMSMI SSFTGLSSAS SFNTFHRGAW CTPPRLFLED QFDVVPPENA SVSSYGKKSV VEERVKKKPQ PVKISPWTLA RLNAEEVSKA
401: AAEARKKSKI IQPVARRENP FVGLEASSSF GSSGRRMFPT KYEGVNNNGK QRRQSKRIRL PAELPLEPLM NVQTKAAMET STSSGLAPLQ LEARSAFQTS
501: RAMSGSGNVM VTSSPESSLD SHDIHPFRVS SEAEDAAQLN GFSSAVGLMG QQRGQQQQQQ LSMMMMPLSR STSDGYDASG GEDSDQVPSR NIHKSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)