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AT1G69410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : eukaryotic elongation factor 5A-3
Curator
Summary (TAIR10)
Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410.
Computational
Description (TAIR10)
eukaryotic elongation factor 5A-3 (ELF5A-3); FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity; INVOLVED IN: translational initiation, translational frameshifting, positive regulation of translational termination, peptidyl-lysine modification to hypusine, positive regulation of translational elongation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-1 (TAIR:AT1G13950.1); Has 1331 Blast hits to 1330 proteins in 408 species: Archae - 255; Bacteria - 0; Metazoa - 363; Fungi - 252; Plants - 260; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0231eggNOG:KOG3271EMBL:AC018364EMBL:AC073178EMBL:AF372933EMBL:AY060530EMBL:AY087040
EMBL:CP002684EnsemblPlants:AT1G69410EnsemblPlants:AT1G69410.1entrez:843273Gene3D:2.30.30.30Gene3D:2.40.50.140GeneID:843273
Genevisible:Q9C505GO:GO:0003743GO:GO:0003746GO:GO:0006452GO:GO:0043022GO:GO:0045901GO:GO:0045905
Gramene:AT1G69410.1hmmpanther:PTHR11673hmmpanther:PTHR11673:SF8HOGENOM:HOG000106270InParanoid:Q9C505InterPro:IPR001884InterPro:IPR008991
InterPro:IPR012340InterPro:IPR014722InterPro:IPR019769InterPro:IPR020189iPTMnet:Q9C505KEGG:ath:AT1G69410KO:K03263
OMA:CAMECKEPANTHER:PTHR11673PaxDb:Q9C505Pfam:PF01287Pfam:Q9C505PhylomeDB:Q9C505PIRSF:PIRSF003025
PRIDE:Q9C505PRO:PR:Q9C505PROSITE:PS00302ProteinModelPortal:Q9C505Proteomes:UP000006548Reactome:R-ATH-204626RefSeq:NP_177100.1
scanprosite:PS00302SMART:SM01376SMR:Q9C505STRING:3702.AT1G69410.1SUPFAM:SSF50104SUPFAM:SSF50249TAIR:AT1G69410
tair10-symbols:ATELF5A-3tair10-symbols:ELF5A-3TIGRfam:TIGR00037TIGRFAMs:TIGR00037UniGene:At.47614UniProt:Q9C505
Coordinates (TAIR10) chr1:+:26089301..26090194
Molecular Weight (calculated) 17208.30 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.45
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDDEHHFES SDAGASKTYP QQAGNIRKGG HIVIKGRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRVDY QLIDISEDGF
101: VSLLTDNGST KDDLKLPTDE ALLTQLKNGF EEGKDIVVSV MSAMGEEQMC ALKEVGPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)