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AT1G69330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.937
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G29270.2); Has 288 Blast hits to 287 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7FHeggNOG:ENOG4111AW5EMBL:AC018364EMBL:AC073178EMBL:AY090372EMBL:AY143833EMBL:CP002684
EnsemblPlants:AT1G69330EnsemblPlants:AT1G69330.1entrez:843265Gene3D:3.30.40.10GeneID:843265GO:GO:0008270GO:GO:0016021
Gramene:AT1G69330.1hmmpanther:PTHR13139hmmpanther:PTHR13139:SF47InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907InterPro:IPR027370
KEGG:ath:AT1G69330OMA:CHEYSDDPfam:PF13445Pfscan:PS50089PhylomeDB:Q9C546PROSITE:PS00518PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_564959.1scanprosite:PS00518SMR:Q9C546SUPFAM:SSF57850TAIR:AT1G69330TMHMM:TMhelix
UniGene:At.35428UniProt:Q9C546
Coordinates (TAIR10) chr1:-:26064138..26064950
Molecular Weight (calculated) 30424.70 Da
IEP (calculated) 7.45
GRAVY (calculated) 0.15
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MWGFASNVIG SMGLKKSPKD SAQASSQCSD DEVSNISRDE EGLECPICWE SFNIVENVPY VLWCGHTLCQ NCVFGLQSAV LRLSSQDIRI PFFVSCPWCQ
101: LLSFRIVYKG NLKFPRKNFF LLWMVESLNG DRTSHGDRTS HGSLVTDNQQ SAPTPRCSMS LGNHSSNNNL VARPLLRNQS TDLLPHHDHS NQPSRQLFSF
201: HKSLDFFISF TSKFPFVIIF LLIVFFAIPG SLIILALYFL LTILFAVPAG LVLYFAYPIL ERLVNEITSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)