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AT1G69260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ABI five binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABI five binding protein (AFP1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein 2 (TAIR:AT1G13740.1); Has 267 Blast hits to 267 proteins in 42 species: Archae - 0; Bacteria - 6; Metazoa - 29; Fungi - 9; Plants - 184; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITPZeggNOG:ENOG410YGKSEMBL:AC008262EMBL:AC018364EMBL:AY088834EMBL:AY136357EMBL:BT000199
EMBL:CP002684EnsemblPlants:AT1G69260EnsemblPlants:AT1G69260.1entrez:843257GeneID:843257Genevisible:Q9LQ98GO:GO:0005634
GO:GO:0009738Gramene:AT1G69260.1hmmpanther:PTHR31413hmmpanther:PTHR31413:SF4HOGENOM:HOG000239856InParanoid:Q9LQ98IntAct:Q9LQ98
InterPro:IPR012463InterPro:IPR031307InterPro:IPR032308InterPro:IPR032310KEGG:ath:AT1G69260OMA:GMSEMESPANTHER:PTHR31413
PaxDb:Q9LQ98Pfam:PF07897Pfam:PF16135Pfam:PF16136Pfam:Q9LQ98PhylomeDB:Q9LQ98PIR:F96716
PRIDE:Q9LQ98PRO:PR:Q9LQ98ProteinModelPortal:Q9LQ98Proteomes:UP000006548RefSeq:NP_564956.1STRING:3702.AT1G69260.1TAIR:AT1G69260
tair10-symbols:AFP1UniGene:At.16506UniGene:At.66942UniProt:Q9LQ98
Coordinates (TAIR10) chr1:+:26039314..26040570
Molecular Weight (calculated) 37533.00 Da
IEP (calculated) 8.65
GRAVY (calculated) -0.76
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)