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AT1G69180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant-specific transcription factor YABBY family protein
Curator
Summary (TAIR10)
Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region.
Computational
Description (TAIR10)
CRABS CLAW (CRC); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 451 Blast hits to 449 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 437; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXQHeggNOG:ENOG410Y6JTEMBL:AC008262EMBL:AC018364EMBL:AF132606EMBL:AK229609EMBL:AY088672
EMBL:BT008618EMBL:CP002684EMBL:DQ446412EnsemblPlants:AT1G69180EnsemblPlants:AT1G69180.1entrez:843249ExpressionAtlas:Q8L925
Gene3D:1.10.30.10GeneID:843249Genevisible:Q8L925GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009944GO:GO:0010254GO:GO:0010582GO:GO:0030154GO:GO:0046872GO:GO:0048440
GO:GO:0048479Gramene:AT1G69180.1hmmpanther:PTHR31675hmmpanther:PTHR31675:SF3HOGENOM:HOG000239859InterPro:IPR006780InterPro:IPR009071
KEGG:ath:AT1G69180OMA:SICNTILPANTHER:PTHR31675PaxDb:Q8L925Pfam:PF04690Pfam:Q8L925PhylomeDB:Q8L925
PIR:G96715PRIDE:Q8L925PRO:PR:Q8L925ProteinModelPortal:Q8L925Proteomes:UP000006548RefSeq:NP_177078.1STRING:3702.AT1G69180.1
SUPFAM:SSF47095TAIR:AT1G69180tair10-symbols:CRCUniGene:At.11478UniProt:Q1PFF1UniProt:Q8L925
Coordinates (TAIR10) chr1:-:26007734..26008940
Molecular Weight (calculated) 19723.60 Da
IEP (calculated) 10.02
GRAVY (calculated) -0.52
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLEEKPTMT ASRASPQAEH LYYVRCSICN TILAVGIPLK RMLDTVTVKC GHCGNLSFLT TTPPLQGHVS LTLQMQSFGG SDYKKGSSSS SSSSTSSDQP
101: PSPSPPFVVK PPEKKQRLPS AYNRFMRDEI QRIKSANPEI PHREAFSAAA KNWAKYIPNS PTSITSGGHN MIHGLGFGEK K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)