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AT1G69120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.
Computational
Description (TAIR10)
APETALA1 (AP1); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G26310.1); Has 8031 Blast hits to 8015 proteins in 981 species: Archae - 10; Bacteria - 56; Metazoa - 785; Fungi - 329; Plants - 6623; Viruses - 2; Other Eukaryotes - 226 (source: NCBI BLink).
Protein Annotations
BioGrid:28465DIP:DIP-33763NeggNOG:COG5068eggNOG:KOG0014EMBL:AC008262EMBL:AF466771EMBL:AF466772
EMBL:AF466773EMBL:AF466774EMBL:AF466775EMBL:AF466776EMBL:AF466777EMBL:AF466778EMBL:AF466779
EMBL:AF466780EMBL:AF466781EMBL:AF466782EMBL:AF466783EMBL:AF466784EMBL:AF466785EMBL:AK175933
EMBL:AY087956EMBL:BT004113EMBL:BT004951EMBL:CP002684EMBL:Z16421EnsemblPlants:AT1G69120EnsemblPlants:AT1G69120.1
entrez:843244GeneID:843244Genevisible:P35631GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009908GO:GO:0009933GO:GO:0010582GO:GO:0030154GO:GO:0045893GO:GO:0046982Gramene:AT1G69120.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF155HOGENOM:HOG000155301InParanoid:P35631IntAct:P35631InterPro:IPR002100InterPro:IPR002487
KEGG:ath:AT1G69120KO:K09264ncoils:CoilOMA:KSHLMLEPaxDb:P35631Pfam:P35631Pfam:PF00319
Pfam:PF01486Pfscan:PS50066Pfscan:PS51297PhylomeDB:P35631PIR:S27109PRIDE:P35631PRINTS:PR00404
PRO:PR:P35631PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297ProteinModelPortal:P35631Proteomes:UP000006548RefSeq:NP_177074.1
scanprosite:PS00350SMART:SM00432SMR:P35631STRING:3702.AT1G69120.1SUPFAM:SSF55455TAIR:AT1G69120tair10-symbols:AGL7
tair10-symbols:AP1UniGene:At.10200UniGene:At.24302UniProt:P35631
Coordinates (TAIR10) chr1:-:25982576..25986102
Molecular Weight (calculated) 30184.30 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.89
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA
101: KIELLERNQR HYLGEDLQAM SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQKKEKA IQEQNSMLSK QIKEREKILR AQQEQWDQQN QGHNMPPPLP
201: PQQHQIQHPY MLSHQPSPFL NMGGLYQEDD PMAMRRNDLE LTLEPVYNCN LGCFAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)