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AT1G68980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G69290.1); Has 15528 Blast hits to 6193 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 63; Plants - 15194; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKUBeggNOG:ENOG410YCYMEMBL:AC011665EMBL:AK226281EMBL:CP002684EnsemblPlants:AT1G68980EnsemblPlants:AT1G68980.1
entrez:843231GeneID:843231Genevisible:Q9CAA5GO:GO:0005739Gramene:AT1G68980.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF304
HOGENOM:HOG000082913InParanoid:Q9CAA5InterPro:IPR002885KEGG:ath:AT1G68980OMA:LVECMFKPaxDb:Q9CAA5Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:Q9CAA5Pfscan:PS51375PhylomeDB:Q9CAA5PIR:C96714PRIDE:Q9CAA5
PRO:PR:Q9CAA5PROSITE:PS51375ProteinModelPortal:Q9CAA5Proteomes:UP000006548RefSeq:NP_177062.1SMR:Q9CAA5TAIR:AT1G68980
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.207UniGene:At.35461UniProt:Q9CAA5
Coordinates (TAIR10) chr1:+:25933023..25934882
Molecular Weight (calculated) 69853.60 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.12
Length 619 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRKTLTLIS LRRPFSSIPS KTLTPHQKSS FESTLHHSLI THDTDQAWKV FRSFAAASSL PDKRLLNSLI THLSSFHNTD QNTSLRHRLK RAFVSTTYVI
101: EKDPILLEFE TVRTVLESMK LAKASGPALA LVECMFKNRY FVPFDLWGDL LIDVCRENGS LAAFLKVFRE SCRIAVDEKL DFMKPDLVAS NAALEACCRQ
201: MESLADAENL IESMDVLGVK PDELSFGFLA YLYARKGLRE KISELEDLMD GLGFASRRIL YSSMISGYVK SGDLDSASDV ILCSLKGVGE ASSFSEETYC
301: ELVRGFIESK SVESLAKLII EAQKLESMST DVGGSVGFGI VNACVKLGFS GKSILDELNA QGGSGGIGVY VPILKAYCKE GRTSEATQLV TEISSSGLQL
401: DVETYNTMIE ASMTKHDFLS ALTLFRDMRE TRVADLKRCY LTIMTGLLEN QRPELMAEFV EEVMEDPRVE VKSHDWNSII HAFCKSGRLG DAKSTFRRMT
501: FLQYEPNNQT YLSLINGYVS CEKYFEVVVI WKEFKDKKAK LEHALADAFL NALVKGGFFG TALQVIEKCQ EMKIFVDKWR YKATFMETQK NLRLPKLRKR
601: KMKKIEFLDA FKNWARITT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)