AT1G68930.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 47331 Blast hits to 14466 proteins in 272 species: Archae - 2; Bacteria - 18; Metazoa - 110; Fungi - 135; Plants - 46381; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:25918314..25920545 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82754.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.62 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 743 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASNYYSVQI KQCIGLGARN QSRYVKMIHG NIIRALPYPE TFLYNNIVHA YALMKSSTYA RRVFDRIPQP NLFSWNNLLL AYSKAGLISE MESTFEKLPD 101: RDGVTWNVLI EGYSLSGLVG AAVKAYNTMM RDFSANLTRV TLMTMLKLSS SNGHVSLGKQ IHGQVIKLGF ESYLLVGSPL LYMYANVGCI SDAKKVFYGL 201: DDRNTVMYNS LMGGLLACGM IEDALQLFRG MEKDSVSWAA MIKGLAQNGL AKEAIECFRE MKVQGLKMDQ YPFGSVLPAC GGLGAINEGK QIHACIIRTN 301: FQDHIYVGSA LIDMYCKCKC LHYAKTVFDR MKQKNVVSWT AMVVGYGQTG RAEEAVKIFL DMQRSGIDPD HYTLGQAISA CANVSSLEEG SQFHGKAITS 401: GLIHYVTVSN SLVTLYGKCG DIDDSTRLFN EMNVRDAVSW TAMVSAYAQF GRAVETIQLF DKMVQHGLKP DGVTLTGVIS ACSRAGLVEK GQRYFKLMTS 501: EYGIVPSIGH YSCMIDLFSR SGRLEEAMRF INGMPFPPDA IGWTTLLSAC RNKGNLEIGK WAAESLIELD PHHPAGYTLL SSIYASKGKW DSVAQLRRGM 601: REKNVKKEPG QSWIKWKGKL HSFSADDESS PYLDQIYAKL EELNNKIIDN GYKPDTSFVH HDVEEAVKVK MLNYHSERLA IAFGLIFVPS GQPIRVGKNL 701: RVCVDCHNAT KHISSVTGRE ILVRDAVRFH RFKDGTCSCG DFW |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)