AT1G68820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.525 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane Fragile-X-F-associated protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 2761 Blast hits to 2715 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1602; Fungi - 4; Plants - 542; Viruses - 213; Other Eukaryotes - 400 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:25865852..25868800 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53639.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.92 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.26 | ||||||||||||||||||||||||||||||||||||
| Length | 468 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVQRRVMSW RRVWKSFQAA SAHCLLFSFT LLLALKLDHV VSHSWWFVFA PLWLFHAVIA RGRFSLPAPS MPHDRHWAPF HSVMATPLLV AFEILLCVHL 101: EDKYVVDLKI VFLPLLAFEV AILIDNVRMC RTLMPGDEET MSDEAIWETL PHFWVSISMV FFIAATTFTL LKLCGDVAAL GWWDLFINFG IAECFAFLVC 201: TKWSNQSIHR YSHIPEPSSS SMVVRYLDWN RGLVVTADDE HQQSNRICGL QDIGGHVMKI PFVTFQIILF MRLEGTPASA KNIPILVLFV PLFLLQGAGV 301: LFAMYRLVEK SVLLINSGSG SYGRYFTATS SAREFLGFFQ HGARLLGWWS IDEGSREEQA RLYSGEATGY NTFSPEVVKK MPKSDLVEEI WRLQAALSEQ 401: TDITSYSQQE YERLQNEKIL CRVCFEDPIN VVLLPCRHHV LCSTCCEKCK KCPICRVLIE ERMPVYDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)