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AT1G68765.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
SwissProt : extracellular 16381842
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Putative membrane lipoprotein
Curator
Summary (TAIR10)
Encodes a small protein of 77 amino acids. Loss of function mutations are defective in the process of ethylene independent floral organ abscission. Although the mutants have a normal appearing abscission zone, the floral organs do not abscisce. The peptide appears to be secreted and may function as a ligand. Arabidopsis 35S:IDA lines constitutively overexpressing IDA exhibit earlier abscission of floral organs, showing that the abscission zones are responsive to IDA soon after the opening of the flowers. In addition, ectopic abscission was observed at the bases of the pedicel, branches of the inflorescence, and cauline leaves. The silique valves also dehisced prematurely.
Computational
Description (TAIR10)
INFLORESCENCE DEFICIENT IN ABSCISSION (IDA); Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J6W3eggNOG:ENOG41119QHEMBL:AC011914EMBL:AY087883
EMBL:BT025310EMBL:CP002684EnsemblPlants:AT1G68765EnsemblPlants:AT1G68765.1
entrez:843208GeneID:843208Genevisible:Q8LAD7GO:GO:0005102
GO:GO:0005576GO:GO:0005615GO:GO:0009723GO:GO:0010102
GO:GO:0010227GO:GO:0010468GO:GO:0045490GO:GO:0048046
Gramene:AT1G68765.1hmmpanther:PTHR33599hmmpanther:PTHR33599:SF3HOGENOM:HOG000090888
KEGG:ath:AT1G68765OMA:PCRTMMVPaxDb:Q8LAD7Pfam:Q8LAD7
Pfscan:PS51257PhylomeDB:Q8LAD7PRIDE:Q8LAD7PRO:PR:Q8LAD7
Proteomes:UP000006548RefSeq:NP_564941.1STRING:3702.AT1G68765.1TAIR:AT1G68765
tair10-symbols:IDATMHMM:TMhelixUniGene:At.64081UniProt:Q8LAD7
Coordinates (TAIR10) chr1:-:25830157..25830390
Molecular Weight (calculated) 8433.66 Da
IEP (calculated) 11.09
GRAVY (calculated) 0.26
Length 77 amino acids
Sequence (TAIR10)
(BLAST)
1: MAPCRTMMVL LCFVLFLAAS SSCVAAARIG ATMEMKKNIK RLTFKNSHIF GYLPKGVPIP PSAPSKRHNS FVNSLPH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)