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AT1G68640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : bZIP transcription factor family protein
Curator
Summary (TAIR10)
Encodes bZIP-transcription factor. Mutant plants have extra floral organs. PAN is essential for AG activation in early flowers of short-day-grown plants.
Computational
Description (TAIR10)
PERIANTHIA (PAN); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 6 (TAIR:AT3G12250.2); Has 796 Blast hits to 796 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 33; Plants - 710; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
BioGrid:28415eggNOG:ENOG410IMKZeggNOG:ENOG410YG7SEMBL:AC008075EMBL:AF111711EMBL:AK118286EMBL:BT008586
EMBL:CP002684EnsemblPlants:AT1G68640EnsemblPlants:AT1G68640.1entrez:843194GeneID:843194Genevisible:Q9SX27GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009909GO:GO:0043565Gramene:AT1G68640.1hmmpanther:PTHR22952
hmmpanther:PTHR22952:SF209HOGENOM:HOG000116597InParanoid:Q9SX27IntAct:Q9SX27InterPro:IPR004827InterPro:IPR025422KEGG:ath:AT1G68640
KO:K14431ncoils:CoilOMA:AVMSHYDPaxDb:Q9SX27Pfam:PF00170Pfam:PF14144Pfam:Q9SX27
Pfscan:PS50217PhylomeDB:Q9SX27PIR:H96710PRIDE:Q9SX27PRO:PR:Q9SX27PROSITE:PS00036PROSITE:PS50217
ProteinModelPortal:Q9SX27Proteomes:UP000006548RefSeq:NP_177031.1scanprosite:PS00036SMART:SM00338SMR:Q9SX27STRING:3702.AT1G68640.1
SUPFAM:SSF57959TAIR:AT1G68640tair10-symbols:PANUniGene:At.35500UniGene:At.50012UniProt:Q9SX27
Coordinates (TAIR10) chr1:-:25769739..25772303
Molecular Weight (calculated) 50460.50 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.49
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSSFKTVPF TPDFYSQSSY FFRGDSCLEE FHQPVNGFHH EEAIDLSPNV TIASANLHYT TFDTVMDCGG GGGGGLRERL EGGEEECLDT GQLVYQKGTR
101: LVGGGVGEVN SSWCDSVSAM ADNSQHTDTS TDIDTDDKTQ LNGGHQGMLL ATNCSDQSNV KSSDQRTLRR LAQNREAARK SRLRKKAYVQ QLENSRIRLA
201: QLEEELKRAR QQGSLVERGV SADHTHLAAG NGVFSFELEY TRWKEEHQRM INDLRSGVNS QLGDNDLRVL VDAVMSHYDE IFRLKGIGTK VDVFHMLSGM
301: WKTPAERFFM WLGGFRSSEL LKILGNHVDP LTDQQLIGIC NLQQSSQQAE DALSQGMEAL QQSLLETLSS ASMGPNSSAN VADYMGHMAM AMGKLGTLEN
401: FLRQADLLRQ QTLQQLHRIL TTRQAARAFL VIHDYISRLR ALSSLWLARP RD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)