AT1G68580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT5G55600.3); Has 202 Blast hits to 186 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:25753582..25755059 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45425.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.78 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||
| Length | 396 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEKDAGGFN MSTFMNRKFQ EPIQQIKTFS WMGFSWTCRK RRKHYQSYLR NGVRISVNDF VYVLAEQHKR LVAYIEDLYE DSKGKKMVVV RWFHKTEEVG 101: SVLSDDDNDR EIFFSLNRQD ISIECIDYLA TVLSPQHYEK FLKVPMHVQT VAFFCQKLYG DDGLKPYDIT QLEGYWRQEM LRYLNVSILK SFEGAQAPGT 201: DPGLKAPLVG CVGIRSRKRR RPSPVGTLNV SYAGDMKGDC KSSPDSVLAV TDASIFKGDE DGSSHHIKKG SLIEVLSEDS GIRGCWFKAL VLKKHKDKVK 301: VQYQDIQDAD DESKKLEEWI LTSRVAAGDH LGDLRIKGRK VVRPMLKPSK ENDVCVIGVG MPVDVWWCDG WWEGIVVQEV SEEKFEVYLP GELRHL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)