suba logo
AT1G68520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : B-box type zinc finger protein with CCT domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G25440.1); Has 3472 Blast hits to 2352 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 1; Plants - 3365; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Protein Annotations
BioGrid:28402eggNOG:COG5641eggNOG:KOG1601EMBL:AC011915
EMBL:AY054625EMBL:AY081541EMBL:AY084427EMBL:CP002684
EnsemblPlants:AT1G68520EnsemblPlants:AT1G68520.1entrez:843181GeneID:843181
Genevisible:Q8LG76GO:GO:0003700GO:GO:0005634GO:GO:0006355
GO:GO:0008270Gramene:AT1G68520.1hmmpanther:PTHR31874hmmpanther:PTHR31874:SF1
HOGENOM:HOG000240360InParanoid:Q8LG76IntAct:Q8LG76InterPro:IPR000315
InterPro:IPR010402iPTMnet:Q8LG76KEGG:ath:AT1G68520MINT:MINT-8063821
OMA:TSPFEISPaxDb:Q8LG76Pfam:PF00643Pfam:PF06203
Pfam:Q8LG76Pfscan:PS50119Pfscan:PS51017PhylomeDB:Q8LG76
PIR:D96709PRIDE:Q8LG76PRO:PR:Q8LG76PROSITE:PS50119
PROSITE:PS51017Proteomes:UP000006548RefSeq:NP_564932.1SMART:SM00336
STRING:3702.AT1G68520.1TAIR:AT1G68520UniGene:At.23999UniGene:At.69467
UniGene:At.74856UniProt:Q8LG76
Coordinates (TAIR10) chr1:-:25709331..25710749
Molecular Weight (calculated) 46062.10 Da
IEP (calculated) 5.49
GRAVY (calculated) -0.78
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)