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AT1G68480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue. Together with NUB, it is involved in stamen and carpel development.
Computational
Description (TAIR10)
JAGGED (JAG); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G13400.1); Has 723 Blast hits to 723 proteins in 72 species: Archae - 0; Bacteria - 6; Metazoa - 56; Fungi - 19; Plants - 626; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
BioGrid:28398eggNOG:ENOG410IY2NeggNOG:ENOG410XVEZEMBL:AC011915EMBL:AY465924EMBL:CP002684EnsemblPlants:AT1G68480
EnsemblPlants:AT1G68480.1entrez:843177GeneID:843177Genevisible:Q6S591GO:GO:0003700GO:GO:0005634GO:GO:0006355
GO:GO:0009908GO:GO:0009965GO:GO:0010093GO:GO:0010158GO:GO:0046872GO:GO:0048440GO:GO:0048443
GO:GO:0048653Gramene:AT1G68480.1hmmpanther:PTHR26374hmmpanther:PTHR26374:SF180HOGENOM:HOG000090887InParanoid:Q6S591InterPro:IPR007087
InterPro:IPR031113KEGG:ath:AT1G68480OMA:INRFQDHPANTHER:PTHR26374:SF180PaxDb:Q6S591Pfam:Q6S591Pfscan:PS50157
PhylomeDB:Q6S591PIR:H96708PRIDE:Q6S591PRO:PR:Q6S591PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q6S591
Proteomes:UP000006548RefSeq:NP_177015.3scanprosite:PS00028SMR:Q6S591STRING:3702.AT1G68480.1SUPFAM:SSF57667TAIR:AT1G68480
tair10-symbols:JAGUniGene:At.35517UniProt:Q6S591
Coordinates (TAIR10) chr1:-:25684543..25685932
Molecular Weight (calculated) 28381.00 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.99
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MRHEENYLDL NNLPDDFSKD GNKQALEEGS SSGQRKKKGS KEGKDESGKV YECRFCSLKF CKSQALGGHM NRHRQERETE TLNQARQLVY RNDTITPPGI
101: SPFGYHHTTD PTIYRSVYSS PMIYPGSSST NLVPQPPMPP PPPPYPYSSN QYSPHNHFND YYLNPSFRGS RSISPSPNLP TTTTVDYMAD SPVEPGYTCV
201: GAPIGPTGFP IRGPSIVRAP LEPPQGRDGD ASRQRLDHSL RFPINRFQDH HSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)