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AT1G68440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.549
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
DNASU:843173eggNOG:ENOG410J0IIeggNOG:ENOG41114KPEMBL:AC015986EMBL:AY058163EMBL:AY087321EMBL:AY124826
EMBL:CP002684EnsemblPlants:AT1G68440EnsemblPlants:AT1G68440.1entrez:843173GeneID:843173GO:GO:0016021Gramene:AT1G68440.1
hmmpanther:PTHR36715hmmpanther:PTHR36715:SF1HOGENOM:HOG000090786KEGG:ath:AT1G68440OMA:HENVVATPhylomeDB:Q9M9C9PIR:D96708
Proteomes:UP000006548RefSeq:NP_564930.1STRING:3702.AT1G68440.1TAIR:AT1G68440TMHMM:TMhelixUniGene:At.20172UniProt:Q9M9C9
Coordinates (TAIR10) chr1:+:25658115..25659035
Molecular Weight (calculated) 33926.10 Da
IEP (calculated) 4.15
GRAVY (calculated) -0.34
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVPVINRIR DFEVGINSIN DPSFLSRSVA VSGIGKLHQA YGFWKWGALI IAFLAYFTNF VSKLNSLVVR LRKIDVSVSS PTLFDDYDSD SDVSCSSTVS
101: SDDEKDEEDE ADDEDEDVDS IFNRRRVNGG FRVRGSDYYD DDDDQGDNGN CTWMGRRYSG SFGDLFSWPD LGGIGSSGVV KLWDHLDIDG DDHENVVATF
201: LKNYNSTSSP FFWAAEKKGV DAVKVKACDP RAGFRMPALL AEWRQPGRLL GNIIGVDTGG VEKVYVRDDV SGEIAVGDLR KFNGVLTDLT ECEAETWWDA
301: DVLISG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)