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AT1G68380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.762
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G68390.1); Has 576 Blast hits to 576 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 551; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JV1VeggNOG:ENOG41106BAEMBL:AC015986EMBL:AK118158EMBL:BT005513EMBL:CP002684EMBL:KJ138948
EnsemblPlants:AT1G68380EnsemblPlants:AT1G68380.1entrez:843167GeneID:843167GO:GO:0008375GO:GO:0016021GO:GO:0016757
Gramene:AT1G68380.1hmmpanther:PTHR31042hmmpanther:PTHR31042:SF16HOGENOM:HOG000237469IntAct:Q9M9C3InterPro:IPR003406KEGG:ath:AT1G68380
OMA:WRASMDPPfam:PF02485PhylomeDB:Q9M9C3PIR:F96707Proteomes:UP000006548RefSeq:NP_177005.1TAIR:AT1G68380
TMHMM:TMhelixUniGene:At.43390UniProt:Q9M9C3
Coordinates (TAIR10) chr1:-:25635933..25637393
Molecular Weight (calculated) 46230.20 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.15
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTQKDQNSP LSQVIELLKK LLHHFHNLLL YFFILWIGVI VGIIVYPSLQ GLSSPSSLTI QSVSQLFFVT PPPPILSPSF QDNGLDMFLI PLKNIMHDME
101: DNELLWRASM DPKIRDYPYP RIPKVAFMFL TWGPLPLAPL WERFFRGHEG LFTIYVHTNS SYDEFMPQDS VFYGRRIPSK RVDWGNANMV EAERRLLANA
201: LLDINNERFI LLSESCIPLF NFSTVYSFLI DSTLTHVDSY DLTIGRVRYD RRMYPHIRMH QWRKGSQWFE LDRAMALEVV SDTFYWPIFK AYSRCPDEHY
301: IPTLLNMRPS LGLRNANRTL TWTDWSKRRA HPRLFGEWEV NVEFLEWLRM KSVGDCKKNG ENKMRLCFLF ARKFSSTALD ELLRLASIVM YF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)