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AT1G68330.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48780.1); Has 155 Blast hits to 147 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 3; Plants - 126; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
DNASU:843162eggNOG:ENOG410JD4VeggNOG:ENOG41118E5EMBL:AK176514
EMBL:AK176515EMBL:AY093181EMBL:BT006288EMBL:CP002684
EnsemblPlants:AT1G68330EnsemblPlants:AT1G68330.1entrez:843162GeneID:843162
GO:GO:0004674GO:GO:0046777Gramene:AT1G68330.1hmmpanther:PTHR31722
hmmpanther:PTHR31722:SF9KEGG:ath:AT1G68330OMA:FPPPAFIPhylomeDB:Q8RWC8
Proteomes:UP000006548RefSeq:NP_177000.2TAIR:AT1G68330UniGene:At.35540
UniProt:Q8RWC8
Coordinates (TAIR10) chr1:+:25611242..25612048
Molecular Weight (calculated) 29216.20 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.53
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIDVCCSEA SGSGISPRIS FSYDLDSTDD GEVRLDSTLL DSGSEFDFCF GSSCSVQEVS PADELFSEGK ILPVQIKKEE SLPQTVTFRV PRSASLSSSS
101: SSSSSSSSSS RAPEKKMRLK ELLLNPESDF EDKPRGLFLQ FKRSISLNYD KSRNSKGLIR SFHFLSRSNS TPNPNLDLLP KETHHPHKTH NLPKHKPPLR
201: RSSSLSSSSV PFYSKKPLGR NSFGNGNGGV RVSPVLNFPP PAFISNVADG FFSIGSLCNG KTNTKTKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)