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AT1G68220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1218)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G52910.1); Has 508 Blast hits to 508 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 508; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJQEeggNOG:ENOG410YGJDEMBL:AC016447EMBL:AY042901EMBL:AY072476EMBL:AY086320EMBL:CP002684
EnsemblPlants:AT1G68220EnsemblPlants:AT1G68220.1entrez:843151GeneID:843151GO:GO:0005886GO:GO:0016021Gramene:AT1G68220.1
hmmpanther:PTHR31769hmmpanther:PTHR31769:SF3HOGENOM:HOG000241124IntAct:Q9C9F7InterPro:IPR009606KEGG:ath:AT1G68220OMA:KADTGGW
Pfam:PF06749PhylomeDB:Q9C9F7PIR:F96705Proteomes:UP000006548RefSeq:NP_564925.1TAIR:AT1G68220TMHMM:TMhelix
UniGene:At.18268UniProt:Q9C9F7
Coordinates (TAIR10) chr1:+:25570322..25571562
Molecular Weight (calculated) 21411.90 Da
IEP (calculated) 8.20
GRAVY (calculated) 0.39
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSVSILTV VTALHLLAFV FAFGAERRRS TAVPVPDQYD EKTICKYGTE ASTVYGMSAF GLLLVSQAVV NGVTKCLCFG KGLVTGTSYT VWAIVFFVVS
101: WVSFLGAEAC LLGGSARNAY HTKSEGIYKG KELSCAVLPV GVFAAGAAFT LMSLIATILY YLAHSKADTG GWEKHQNDGI NIGMTTPSDA PKQQNTEFNK
201: V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)