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AT1G68185.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.892
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin supergroup (InterPro:IPR019955); Has 482 Blast hits to 482 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 88; Plants - 146; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY13eggNOG:ENOG410Y2RZEMBL:AY086618EMBL:BT024600EMBL:CP002684EnsemblPlants:AT1G68185EnsemblPlants:AT1G68185.1
entrez:843147GeneID:843147Gramene:AT1G68185.1hmmpanther:PTHR10562hmmpanther:PTHR10562:SF15HOGENOM:HOG000238048InterPro:IPR000626
InterPro:IPR022617InterPro:IPR029071KEGG:ath:AT1G68185OMA:KEPPEQIPfam:PF11976Pfscan:PS50053PhylomeDB:Q8LCF9
PROSITE:PS50053Proteomes:UP000006548RefSeq:NP_564924.1SMR:Q8LCF9SUPFAM:SSF54236TAIR:AT1G68185UniGene:At.35558
UniProt:Q8LCF9
Coordinates (TAIR10) chr1:+:25556542..25558173
Molecular Weight (calculated) 24224.40 Da
IEP (calculated) 4.31
GRAVY (calculated) -0.74
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGEGEDLEP LFDYRRVQPA NFVCIDDDDD DASVTPIPKK AKTSQTVEKL DDDVKVIEVT GDDDWLLPPP KVIFDKSKDS VEDSTIKALR SKKMELMSFT
101: KTVGDVMQEV EESAKREVEE SRNPSSETAA QLPSEPTNDR AKIVITIQDK DGQKTLRVFA DEKFERVIKL YTDKAKLDPQ NLVFIFDGDK IDPSTTPSEL
201: GMEDHDMIEV HTKKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)