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AT1G68130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : indeterminate(ID)-domain 14
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
indeterminate(ID)-domain 14 (IDD14); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 16 (TAIR:AT1G25250.1); Has 34626 Blast hits to 17187 proteins in 314 species: Archae - 1; Bacteria - 0; Metazoa - 32617; Fungi - 232; Plants - 764; Viruses - 1; Other Eukaryotes - 1011 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5048eggNOG:KOG1721EMBL:AB493524EMBL:AC012563
EMBL:BT026478EMBL:CP002684EnsemblPlants:AT1G68130EnsemblPlants:AT1G68130.1
EnsemblPlants:AT1G68130.2entrez:843141ExpressionAtlas:Q9C9X7Gene3D:3.30.160.60
GeneID:843141Genevisible:Q9C9X7GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009630GO:GO:0009965
GO:GO:0010601GO:GO:0043621GO:GO:0044212GO:GO:0046872
GO:GO:0046982GO:GO:0048444GO:GO:2000012GO:GO:2000904
hmmpanther:PTHR10593hmmpanther:PTHR10593:SF35HOGENOM:HOG000243173InParanoid:Q9C9X7
InterPro:IPR007087InterPro:IPR013087InterPro:IPR015880KEGG:ath:AT1G68130
ncoils:CoilOMA:QITCHNCPaxDb:Q9C9X7Pfam:PF12874
Pfam:Q9C9X7Pfscan:PS50157PhylomeDB:Q9C9X7PIR:F96704
PRIDE:Q9C9X7PRO:PR:Q9C9X7PROSITE:PS00028PROSITE:PS50157
ProteinModelPortal:Q9C9X7Proteomes:UP000006548RefSeq:NP_001077791.1RefSeq:NP_176980.1
scanprosite:PS00028SMART:SM00355SMR:Q9C9X7STRING:3702.AT1G68130.1
SUPFAM:SSF57667TAIR:AT1G68130tair10-symbols:AtIDD14tair10-symbols:IDD14
UniGene:At.23507UniProt:Q9C9X7
Coordinates (TAIR10) chr1:+:25532484..25534317
Molecular Weight (calculated) 47560.80 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.96
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MIDYERSNTT KNINTHHHNP PPSSSSSDLL PDGNGTAVTQ KRKRRPAGTP DPEAEVVSLS PRTLLESDRY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK
101: RETNEEVRKR VYVCPEPTCL HHNPCHALGD LVGIKKHFRR KHSNHKQWIC ERCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDTCTVRR
201: SQPSNHRLHE QQQHTTNATQ TASTAENNEN GDLSIGPILP GHPLQRRQSP PSEQQPSTLL YPFVTNGSIE LQLLPSRNCA DETSLSLSIG TMDQKTMSEV
301: EKKSYEKGET SLEREEARRE TKRQIEIAEL EFAEAKRIRQ HARAELHKAH LFREEASRRI SATMMQITCH NCKQHFQAPA ALVPPPPQTH CTDESTSLAV
401: SYMSSATTEG EKASDRASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)