suba logo
AT1G68120.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic pentacysteine 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic pentacysteine 3 (BPC3); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 216 Blast hits to 216 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVD8eggNOG:ENOG410YBIVEMBL:AC012563EMBL:AY380569EMBL:BT022117EMBL:CP002684EnsemblPlants:AT1G68120
EnsemblPlants:AT1G68120.1entrez:843140GeneID:843140Genevisible:Q9C9X6GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT1G68120.1hmmpanther:PTHR31421hmmpanther:PTHR31421:SF0HOGENOM:HOG000241671InParanoid:Q9C9X6InterPro:IPR010409
KEGG:ath:AT1G68120OMA:LKSHWAKPANTHER:PTHR31421PaxDb:Q9C9X6Pfam:PF06217Pfam:Q9C9X6PIR:E96704
PRIDE:Q9C9X6PRO:PR:Q9C9X6Proteomes:UP000006548RefSeq:NP_176979.2SMART:SM01226STRING:3702.AT1G68120.1TAIR:AT1G68120
tair10-symbols:ATBPC3tair10-symbols:BPC3UniGene:At.35567UniProt:Q9C9X6
Coordinates (TAIR10) chr1:-:25526296..25527108
Molecular Weight (calculated) 30524.60 Da
IEP (calculated) 9.92
GRAVY (calculated) -0.61
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MMEEDGLNNR NWGYYEPSQF RPNLGFQLIP SILDRNEKPF LSPHSQNLNF ITPSNVYGGG SSSVVSYPRD YTVSDAPFMS YSWLNQHKDS KFFSNVPEVS
101: RMTQSMQLLQ PEVVTEVDES VKRRHCSGGQ RGGVPKVKKE KKLKDNNMPR VQRERSPLLR KCIEMVINGV SMDIGGLPVP VCSCTGMPQQ CYRWGCGGWQ
201: SACCTTNVSM YPLPVNTKRR GARIAGRKMS QGAFRKVLEK LSSDGFDFSN PIDLKSHWAK HGTNKFVTIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)