AT1G68070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.806 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger, C3HC4 type (RING finger) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-finger protein for embryogenesis (TAIR:AT2G01735.1); Has 10060 Blast hits to 10035 proteins in 290 species: Archae - 0; Bacteria - 6; Metazoa - 2675; Fungi - 773; Plants - 5064; Viruses - 53; Other Eukaryotes - 1489 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:25515412..25516767 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38300.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.96 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSPESPSGS DSSTPLLRSR QSSPRRQPVI AVLLNRASGR RGASMVVRET AAQELEERRA DWGYSKPVVA LDMLWNTAFV LVAIVMLLVF KEEKPNVPIR 101: IWICGYAIQC LVHVVLVWLE FRKRNARSRP GDLEAAQATN QDSEDEDNDE RFLSTKTCES MNTIISFVWW IVGFYWLVSG GDILLQNATH LYWLTFVFLA 201: FDVFFAIFCV VLACLIGIAL CCCLPCIIAL LYAVAGQEGA SEADLSILPK YRFHTMNNDE KQSDGGGKMI PVDAASENLG NERVLLPEDA DCCICLSSYE 301: DGAELVSLPC NHHFHSTCIV KWLKMNATCP LCKFNILKGN EQE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)