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AT1G68060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : microtubule-associated proteins 70-1
Curator
Summary (TAIR10)
Encodes a microtubule associated protein (MAP70-1). Expressed in all tissues.
Computational
Description (TAIR10)
microtubule-associated proteins 70-1 (MAP70-1); FUNCTIONS IN: microtubule binding; INVOLVED IN: xylem and phloem pattern formation, plant-type cell wall biogenesis, cytoskeleton organization; LOCATED IN: cortical microtubule, transverse to long axis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-2 (TAIR:AT1G24764.1); Has 34541 Blast hits to 21193 proteins in 1686 species: Archae - 525; Bacteria - 3695; Metazoa - 18460; Fungi - 3012; Plants - 2282; Viruses - 76; Other Eukaryotes - 6491 (source: NCBI BLink).
Protein Annotations
BioGrid:28355eggNOG:ENOG410IGWTeggNOG:ENOG410ZDCMEMBL:AC012563EMBL:AM086438EMBL:AY074303EMBL:AY096658
EMBL:CP002684EnsemblPlants:AT1G68060EnsemblPlants:AT1G68060.1entrez:843134GeneID:843134Genevisible:Q9C9X0GO:GO:0005819
GO:GO:0007010GO:GO:0008017GO:GO:0009524GO:GO:0009832GO:GO:0010005GO:GO:0010051GO:GO:0071555
Gramene:AT1G68060.1hmmpanther:PTHR31246HOGENOM:HOG000005796InParanoid:Q9C9X0IntAct:Q9C9X0InterPro:IPR009768iPTMnet:Q9C9X0
KEGG:ath:AT1G68060ncoils:CoilOMA:FASNGFLPANTHER:PTHR31246PaxDb:Q9C9X0Pfam:PF07058Pfam:Q9C9X0
PhylomeDB:Q9C9X0PIR:G96703PRIDE:Q9C9X0PRO:PR:Q9C9X0ProteinModelPortal:Q9C9X0Proteomes:UP000006548RefSeq:NP_176973.1
SMR:Q9C9X0STRING:3702.AT1G68060.1TAIR:AT1G68060tair10-symbols:ATMAP70-1tair10-symbols:MAP70-1UniGene:At.28095UniProt:Q9C9X0
Coordinates (TAIR10) chr1:-:25511392..25514226
Molecular Weight (calculated) 69294.00 Da
IEP (calculated) 9.13
GRAVY (calculated) -0.81
Length 622 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDVSADGGF LSAEQATTPV AIPTPYPSLT VSASYKEKSS GRRRPVRPSF DAAADNEFIT LLHGSDPVKV ELNRLENEVR DKDRELSEAN AEIKALRLSE
101: RQREKACEEL TDELAKLDGK LKLTESLLQS KNLEIKKINE EKKASMAAQF AAEATLRRVH AAQKDDDMPP IEAILAPLEA ELKLARSEIG KLQEDNRALD
201: RLTKSKEAAL LDAERTVETA LAKAALVDDL QNKNQELMKQ IEICQEENKI LDRMHRQKVA EVEKLTQTVR ELEEAVLAGG AAANAVRDYQ RKFQEMNEER
301: KTLDRELARA KVTANRVATV VANEWKDGND KVMPVKQWLE ERRFLQGEMQ QLRDKLAISD RAAKSEAQLK DKFQLRLRVL EETLRGTSSI SIRNTPEGRS
401: MSNGPSRRQS IGGSDNLQKF ASNGFLSKKT PMRNSFTSNS TSVLKNAKGT SKSFDGGTRS LDRGKALLKG PGNYSFNKAC DETKESESPN TWKEDSEEKP
501: PSELPAPATE DNVPGVLYDL LQKEVVALRK SSHEKDQSLK DKDDAIEMLA KKVETLTKAM EVEAKKMRRE VAAMEKEVAA MRVDKDQDNR AKRSSNTKPS
601: SNTAQILAAR AAGRSGLTRS TQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)