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AT1G67990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.831
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.
Computational
Description (TAIR10)
TSM1; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: caffeoyl-CoA 3-O-methyltransferase (TAIR:AT1G67980.1); Has 5258 Blast hits to 5256 proteins in 1447 species: Archae - 33; Bacteria - 3126; Metazoa - 157; Fungi - 79; Plants - 608; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G67990-MONOMERBioCyc:MetaCyc:AT1G67990-MONOMEREC:2.1.1.-eggNOG:COG4122
eggNOG:KOG1663EMBL:AC012563EMBL:AY088274EMBL:BT026412
EMBL:CP002684EnsemblPlants:AT1G67990EnsemblPlants:AT1G67990.1entrez:843127
Gene3D:3.40.50.150GeneID:843127Genevisible:Q9C9W4GO:GO:0009809
GO:GO:0042409GO:GO:0046872GO:GO:0048316GO:GO:0080012
GO:GO:0080076GO:GO:0080077GO:GO:0080078GO:GO:0080088
Gramene:AT1G67990.1gramene_pathway:2.1.1.-gramene_pathway:2.1.1.104gramene_pathway:PWY-1121
gramene_pathway:PWY-361gramene_pathway:PWY-6442gramene_pathway:PWY4FS-9hmmpanther:PTHR10509
hmmpanther:PTHR10509:SF20HOGENOM:HOG000016839InParanoid:Q9C9W4InterPro:IPR002935
InterPro:IPR029063KEGG:ath:AT1G67990KO:K13067OMA:CEVDEYV
PaxDb:Q9C9W4Pfam:PF01596Pfam:Q9C9W4Pfscan:PS51682
PhylomeDB:Q9C9W4PIR:H96702PRIDE:Q9C9W4PRO:PR:Q9C9W4
PROSITE:PS51682ProteinModelPortal:Q9C9W4Proteomes:UP000006548RefSeq:NP_564917.1
SMR:Q9C9W4STRING:3702.AT1G67990.1SUPFAM:SSF53335TAIR:AT1G67990
tair10-symbols:ATTSM1tair10-symbols:TSM1UniGene:At.35580UniPathway:UPA00711
UniProt:Q9C9W4
Coordinates (TAIR10) chr1:+:25489494..25490749
Molecular Weight (calculated) 26352.10 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.07
Length 233 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGRLPDKGI LKSEALKQYI METTAYPREH ELLKELREAT IQRYGNLSEM GVPVDESLFL SMLVKIINAK NTIEIGVFTG YSLFTVALAL PEDGRITAID
101: IDQAGYNLGL EFMKKAGVDH KINFIQSDAV RGLDQLLNGE KQEYDFAFVD ADKTNYVYFL EKLLKLVKVG GIIAFDNTLW FGTLIQKENE VPGHMRAYRE
201: ALLEFNKILA RDPRVEIAQI SIGDGLTLCR RLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)