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AT1G67950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 376 Blast hits to 376 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 87; Plants - 239; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEKZeggNOG:ENOG410Y8ZMEMBL:AY087527EMBL:CP002684EnsemblPlants:AT1G67950EnsemblPlants:AT1G67950.1entrez:843123
ExpressionAtlas:Q8LAY5Gene3D:3.30.70.330GeneID:843123GO:GO:0000166GO:GO:0003676Gramene:AT1G67950.1HOGENOM:HOG000240366
InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT1G67950Pfam:PF00076Pfscan:PS50102PhylomeDB:Q8LAY5PROSITE:PS50102
Proteomes:UP000006548RefSeq:NP_564915.1SMART:SM00360SMR:Q8LAY5SUPFAM:SSF54928TAIR:AT1G67950UniGene:At.27658
UniGene:At.48348UniGene:At.66987UniProt:Q8LAY5
Coordinates (TAIR10) chr1:-:25478884..25480420
Molecular Weight (calculated) 29880.50 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.13
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSEHSFN GFSVKKAEDV VNIMVGRGYA LGKDAMEKAK AFDDRHNLIS NASATIASLD DKMGLSEKLS IGTTVVNEKL RDIDERYQVR
201: EITKSALAAA EETAISARTA LMANPYVSSG ASWFSNAFGA VTKAVKEKVE NGGEGRKEII TLDPSSPKVP AVVPVKLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)