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AT1G67800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Copine (Calcium-dependent phospholipid-binding protein) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 1565 Blast hits to 1560 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 893; Fungi - 2; Plants - 396; Viruses - 12; Other Eukaryotes - 260 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPC8eggNOG:KOG1327EMBL:AY087355EMBL:BT029741EMBL:CP002684EnsemblPlants:AT1G67800EnsemblPlants:AT1G67800.1
EnsemblPlants:AT1G67800.3EnsemblPlants:AT1G67800.4entrez:843106ExpressionAtlas:Q8LB88Gene3D:3.30.40.10GeneID:843106GO:GO:0008270
Gramene:AT1G67800.1Gramene:AT1G67800.3Gramene:AT1G67800.4hmmpanther:PTHR10857hmmpanther:PTHR10857:SF34HOGENOM:HOG000005800IntAct:Q8LB88
InterPro:IPR001841InterPro:IPR002035InterPro:IPR010734InterPro:IPR013083KEGG:ath:AT1G67800KO:K16280Pfam:PF07002
Pfam:PF13920Pfscan:PS50089PhylomeDB:Q8LB88PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_001077787.1RefSeq:NP_564907.1
RefSeq:NP_974100.1SMART:SM00327SMR:Q8LB88STRING:3702.AT1G67800.2SUPFAM:SSF53300SUPFAM:SSF57850TAIR:AT1G67800
UniGene:At.16850UniProt:Q8LB88
Coordinates (TAIR10) chr1:-:25421029..25423237
Molecular Weight (calculated) 47500.30 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.46
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGSSSKESP RGGGSGRRYE RSVSGSSSYS SAWDQSSYYQ TPNHPSASPV SSYNSGRQTP KNLERKYSRI ADNYRSIDEV TAALSHAGLE SSNLIVGIDV
101: TKSNEWTGAR SFGRKSLHFI GTTPNPYQQA ISIIGKTLSV FDEDNLIPCY GFGDATTHDQ DVFSFNPNDT YCNGFEEVLM CYREIVPQLR LSGPTSFAPI
201: IERAMTIVEE SGGQYHVLLI IADGQVTRSV DTDNGGFSPQ EQQTIDAIVR ASEYPLSIVL VGVGDGPWDT MRQFDDNIPA RAFDNFQFVN FTDIMSKNID
301: PARKEAEFAL SALMEIPSQY KATLELGLLG QRTGHCPDRI ALPPPTYATQ SMRNSPRTSR STSFQNKPYD NGVSSTPPST THNESQQQFC PVCLVSAKNM
401: AFNCGHQTCA GCGEDLHVCP ICRSSISVRI KLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)