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AT1G67750.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectate lyase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectate lyase family protein; FUNCTIONS IN: pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G63180.1); Has 1739 Blast hits to 1731 proteins in 272 species: Archae - 0; Bacteria - 767; Metazoa - 0; Fungi - 258; Plants - 701; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G67750-MONOMERBioGrid:28321CAZy:PL1EC:4.2.2.2
eggNOG:COG3866eggNOG:ENOG410IPFFEMBL:AC008113EMBL:AF462797
EMBL:AY088778EMBL:AY101535EMBL:CP002684EnsemblPlants:AT1G67750
EnsemblPlants:AT1G67750.1entrez:843100Gene3D:2.160.20.10GeneID:843100
Genevisible:Q9FXD8GO:GO:0030570GO:GO:0045490GO:GO:0046872
Gramene:AT1G67750.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF26HOGENOM:HOG000237948
InParanoid:Q9FXD8InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334
InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT1G67750KO:K01728
OMA:KWKKWNWPaxDb:Q9FXD8Pfam:PF00544Pfam:Q9FXD8
Pfscan:PS51257PhylomeDB:Q9FXD8PRIDE:Q9FXD8PRINTS:PR00807
PRO:PR:Q9FXD8ProteinModelPortal:Q9FXD8Proteomes:UP000006548RefSeq:NP_564906.1
SMART:SM00656SMR:Q9FXD8STRING:3702.AT1G67750.1SUPFAM:SSF51126
TAIR:AT1G67750TMHMM:TMhelixUniGene:At.20989UniPathway:UPA00545
UniProt:Q9FXD8
Coordinates (TAIR10) chr1:+:25401660..25403165
Molecular Weight (calculated) 44888.40 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.24
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)