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AT1G67570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.770
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3537)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3537); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT3G20300.1); Has 140 Blast hits to 140 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKUKeggNOG:ENOG410YD5PEMBL:CP002684EnsemblPlants:AT1G67570
EnsemblPlants:AT1G67570.1entrez:843078GeneID:843078GO:GO:0005634
GO:GO:0016021Gramene:AT1G67570.1hmmpanther:PTHR31963hmmpanther:PTHR31963:SF2
InParanoid:F4HTN4InterPro:IPR021924iPTMnet:F4HTN4KEGG:ath:AT1G67570
OMA:NTIFFIEPaxDb:F4HTN4Pfam:PF12056Proteomes:UP000006548
RefSeq:NP_564899.1TAIR:AT1G67570TMHMM:TMhelixUniGene:At.24206
UniGene:At.71251UniProt:F4HTN4
Coordinates (TAIR10) chr1:+:25325318..25326938
Molecular Weight (calculated) 51260.30 Da
IEP (calculated) 7.27
GRAVY (calculated) 0.22
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MESQQQQSPA VETPLLLNSN QDHQDRPSPE IDGGGGGGGG EGVNDDLDRT LEWLETFLTL LGFNQSSKQS LVLSWIVFLS IGLVLPVTVL ELGHCLGCER
101: YQYKSFELNI VVSQALLAGV SLLCVSHNLR KHGIRKFLFV DQLSGRMDRL KAQYIQQILN SVRLLAVWSL PCFALKGVRE IIRMYYVPHD QPWLSVAILL
201: SMILSWTYLS TIFLAASAMF HLVCNLQVIH FEDYAKLLEG ESEISLFIYE HMRLRHYLSK ISHRFRIFLL LQFLVVTASQ FTTLFQTTAY SGRITYINGG
301: DFAVSAVVQV VGIILCLHAA TKISHRAQAI ASVASRWHAM MSCSSTDSTQ IRASPSGVHL EATTNPPISF PISRSDSDVE SMDHYMRMPV TNQFPSYMSM
401: SSYHKRQAFV LYLQMNPGGI TIFGWTVDRH LINTIFFIEL SLVTFVLGKT VVFGTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)