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AT1G67430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28524096 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23323832 (2013): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L22p/L17e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L22p/L17e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721), Ribosomal protein L22/L17, conserved site (InterPro:IPR018260); BEST Arabidopsis thaliana protein match is: Ribosomal protein L22p/L17e family protein (TAIR:AT1G27400.1); Has 2094 Blast hits to 2094 proteins in 650 species: Archae - 320; Bacteria - 494; Metazoa - 521; Fungi - 182; Plants - 156; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).
Protein Annotations
BioGrid:28284eggNOG:COG0091eggNOG:KOG3353EMBL:AC004393
EMBL:AK228365EMBL:AY042862EMBL:AY081524EMBL:CP002684
EMBL:Z33937EnsemblPlants:AT1G67430EnsemblPlants:AT1G67430.1entrez:843063
ExpressionAtlas:P51413Gene3D:3.90.470.10GeneID:843063Genevisible:P51413
GO:GO:0003735GO:GO:0005730GO:GO:0005773GO:GO:0006412
GO:GO:0009506GO:GO:0016020GO:GO:0022625GO:GO:0022626
hmmpanther:PTHR11593HOGENOM:HOG000205045InParanoid:P51413IntAct:P51413
InterPro:IPR001063InterPro:IPR005721InterPro:IPR018260OMA:MHIRKAN
PANTHER:PTHR11593PaxDb:P51413PaxDb:Q0WRE5Pfam:P51413
Pfam:PF00237PhylomeDB:P51413PIR:T02163PRIDE:P51413
PRO:PR:P51413PROSITE:PS00464ProteinModelPortal:P51413Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_176910.1scanprosite:PS00464
SMR:P51413STRING:3702.AT1G67430.1SUPFAM:SSF54843TAIR:AT1G67430
TIGRfam:TIGR01038TIGRFAMs:TIGR01038UniGene:At.25610UniProt:P51413
UniProt:Q0WRE5
Coordinates (TAIR10) chr1:+:25262209..25263627
Molecular Weight (calculated) 19854.90 Da
IEP (calculated) 10.79
GRAVY (calculated) -0.80
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKYSQEPDN QTKSCKARGS DLRVHFKNTR ETAHAIRKLP LIKAKRYLED VIAHKQAIPF TRFCRGVGRT AQAKNRHSNG QGRWPAKSAQ FVLDLLKNAE
101: SNAEVKGLDV DALFISHIQV NQAAKQRRRT YRAHGRINPY MSNPCHIELI LSEKEEPVKK EPETQLAAKS KKSAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)