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AT1G67360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Rubber elongation factor protein (REF)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 125 Blast hits to 125 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:28278eggNOG:ENOG410IWT8eggNOG:ENOG41117F2EMBL:AC002130EMBL:AY050911EMBL:AY085233EMBL:AY091413
EMBL:AY136297EMBL:BT000410EMBL:CP002684EnsemblPlants:AT1G67360EnsemblPlants:AT1G67360.1EnsemblPlants:AT1G67360.2entrez:843057
GeneID:843057Genevisible:Q9FYF7GO:GO:0005773Gramene:AT1G67360.1Gramene:AT1G67360.2hmmpanther:PTHR33732hmmpanther:PTHR33732:SF2
HOGENOM:HOG000029051InParanoid:Q9FYF7IntAct:Q9FYF7InterPro:IPR008802iPTMnet:Q9FYF7KEGG:ath:AT1G67360OMA:WAKLNQY
PaxDb:Q9FYF7Pfam:PF05755Pfam:Q9FYF7PhylomeDB:Q9FYF7PIR:A96697PRIDE:Q9FYF7PRO:PR:Q9FYF7
Proteomes:UP000006548RefSeq:NP_176904.1RefSeq:NP_849856.1STRING:3702.AT1G67360.1TAIR:AT1G67360UniGene:At.24217UniGene:At.35662
UniProt:Q9FYF7
Coordinates (TAIR10) chr1:-:25237072..25237913
Molecular Weight (calculated) 26426.50 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.38
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: METEKKNSKE VALKHLAFVR IATIHILASV SNLYEYAKQN SGPLKSAVEK VEGAVTTVVT PVYQKFKDVP DSLLVFLDHK VGEVSYKFDE HAPPMAKKVV
101: NQAHVLIYKA TEKAQSFVKE ARTGGPKAAF NYAATEYKFF VVTNSVKVWA KLNQYKPIHA MGDKALPVAA HFSSRYNDLV TDMTNMGYSL VGYLPLVPVD
201: DIVKAYEKED ARRKKGGDTA GKKGETTDAA DGDKSSSDSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)