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AT1G67170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink).
Protein Annotations
BioGrid:28258eggNOG:ENOG410IR1MeggNOG:ENOG41127E0EMBL:AC004146EMBL:AK228253EMBL:BT005883EMBL:CP002684
EnsemblPlants:AT1G67170EnsemblPlants:AT1G67170.1entrez:843037GeneID:843037GO:GO:0009908GO:GO:0030154Gramene:AT1G67170.1
hmmpanther:PTHR33405hmmpanther:PTHR33405:SF5HOGENOM:HOG000005883InParanoid:Q84TD8IntAct:Q84TD8KEGG:ath:AT1G67170ncoils:Coil
OMA:SMKSEREPaxDb:Q84TD8Pfam:Q84TD8PhylomeDB:Q84TD8PIR:F96695PRIDE:Q84TD8PRO:PR:Q84TD8
ProteinModelPortal:Q84TD8Proteomes:UP000006548RefSeq:NP_176888.2SMR:Q84TD8STRING:3702.AT1G67170.1TAIR:AT1G67170UniGene:At.35681
UniProt:Q84TD8
Coordinates (TAIR10) chr1:+:25127727..25129145
Molecular Weight (calculated) 39744.90 Da
IEP (calculated) 7.49
GRAVY (calculated) -0.84
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)