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AT1G67090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : ribulose bisphosphate carboxylase small chain 1A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribulose bisphosphate carboxylase small chain 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: carbon fixation, response to cold, response to blue light, response to red light, response to far red light; LOCATED IN: in 10 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1998 Blast hits to 1975 proteins in 459 species: Archae - 0; Bacteria - 424; Metazoa - 0; Fungi - 0; Plants - 969; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1261-MONOMERBioCyc:MetaCyc:AT1G67090-MONOMERBioGrid:28250EC:4.1.1.39eggNOG:COG4451eggNOG:ENOG410IM2HEMBL:AC004146
EMBL:AC007152EMBL:AF325004EMBL:AF325011EMBL:AF372874EMBL:AF410291EMBL:AY054188EMBL:AY054581
EMBL:AY058831EMBL:AY059940EMBL:AY062612EMBL:AY062711EMBL:AY065101EMBL:AY093380EMBL:AY093388
EMBL:AY097366EMBL:BT000362EMBL:BT002076EMBL:CP002684EMBL:X13611EMBL:X68342EnsemblPlants:AT1G67090
EnsemblPlants:AT1G67090.1entrez:843029ExpressionAtlas:P10795Gene3D:3.30.190.10GeneID:843029Genevisible:P10795GO:GO:0004497
GO:GO:0005507GO:GO:0009409GO:GO:0009507GO:GO:0009535GO:GO:0009570GO:GO:0009579GO:GO:0009637
GO:GO:0009853GO:GO:0009941GO:GO:0010114GO:GO:0010218GO:GO:0015979GO:GO:0016020GO:GO:0016984
GO:GO:0019253GO:GO:0022626GO:GO:0031969GO:GO:0031977GO:GO:0048046GO:GO:0080158gramene_plant_reactome:1119519
gramene_plant_reactome:6877215hmmpanther:PTHR31262hmmpanther:PTHR31262:SF4HOGENOM:HOG000141332InParanoid:P10795IntAct:P10795InterPro:IPR000894
InterPro:IPR024680InterPro:IPR024681iPTMnet:P10795KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39KEGG:ath:AT1G67090KO:K01602
MINT:MINT-2584041OMA:YREHGNSPaxDb:P10795Pfam:P10795Pfam:PF00101Pfam:PF12338PhylomeDB:P10795
PIR:G96694PIR:S03720PRIDE:P10795PRINTS:PR00152PRO:PR:P10795ProteinModelPortal:P10795Proteomes:UP000006548
RefSeq:NP_176880.1SMART:SM00961SMR:P10795STRING:3702.AT1G67090.1SUPFAM:SSF55239TAIR:AT1G67090tair10-symbols:RBCS1A
UniGene:At.12721UniGene:At.30194UniGene:At.37531UniGene:At.46639UniGene:At.49098UniGene:At.67454UniGene:At.68122
UniGene:At.70032UniGene:At.70053UniProt:P10795UniProt:Q0WVH4World-2DPAGE:0003:P10795
Coordinates (TAIR10) chr1:-:25048465..25049249
Molecular Weight (calculated) 20217.20 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.27
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)