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AT1G67040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNVPeggNOG:ENOG410YEDQEMBL:AC007152EMBL:CP002684EnsemblPlants:AT1G67040EnsemblPlants:AT1G67040.1entrez:843024
GeneID:843024GO:GO:0009506Gramene:AT1G67040.1hmmpanther:PTHR21726hmmpanther:PTHR21726:SF29HOGENOM:HOG000093049InterPro:IPR032795
KEGG:ath:AT1G67040OMA:ISFTFNSPfam:PF14383PhylomeDB:Q9FZH7PIR:C96694Proteomes:UP000006548RefSeq:NP_176875.1
TAIR:AT1G67040UniGene:At.52416UniProt:Q9FZH7
Coordinates (TAIR10) chr1:-:25019105..25021922
Molecular Weight (calculated) 92801.20 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.64
Length 826 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGELQETTA PCAAITEKRP NRLGGCVGVF FQLFDWNRRF AKKKLFSRKS LLPGKQVSKR FGGNEKMLKS KLNLIDDENR GSFPNRNEVM EVKKHEMRSP
101: SLVARLMGLE SMPSNHRDKG KNKKKKPLFS QIQDTDKCDL FDVEEEEEDS GVDKLRPQKM QRTTGVCDRR VAVKKFGSEA LQIKNVLTRV RKHHQYNHQH
201: QKLASPVRSP RMNRRSSRLI DAAARILEPG KRNAKGAIAY PGSTGIRRFE NAAKEPVVSP EFQCGYNNSV ASCKSCGSLV DVNGSIQVVQ DTGNNMACVS
301: ESTPFQRSKR NVFWRNEDSS VSVSGKDSTD QMVKKALHRA QFKDEMSLPG YRNRSEYHKK VLHREERFPP EARSFALPSK RSCSSPANAI NSKEKDFIAM
401: NRGSTSRSHH SKSPVKFENS DLNLQRKSHT RVEESCNRSG LSTPGRKRRL ACESGHGRGS SSMSPVSRRL DSEYSCACSN ETAFSSLKLG SSNRHYSQCC
501: RETKERRGVQ RVPRPSFTKR PLLDVGTLGL IQQKLKELAS QEEDEANGES GFPNKPASLI LHELLSSLAL QQQPYVRDID MPYRRKGKTE FWSSIGNANS
601: EYTSPGSVLD ASFSNESCFS NSFDNISGQM RLPLEPIEPD WDILEDYATS FKNSTSDGNY QAIASLISHV SNVLRCLSNT GLILTQQRFT IAREVIIHTE
701: LLVGTTTTQE NYLIGPELFD ELMIYAARSD NLVNLPGLTG GFLVDAMIEH LEETNISCGL LKPLTAKQDE LIRGVIEEVP KWARVNMDEV IGIEMDLETH
801: LFGVGSEIAY EILRCLIGEL ATDLYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)