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AT1G66670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16207701 (2006): plastid
  • PMID:12938931 (2003): plastid
  • PMID:11278690 (2001): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CLP protease proteolytic subunit 3
Curator
Summary (TAIR10)
One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational
Description (TAIR10)
CLP protease proteolytic subunit 3 (CLPP3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease P4 (TAIR:AT5G45390.1); Has 13369 Blast hits to 13367 proteins in 2989 species: Archae - 6; Bacteria - 8381; Metazoa - 147; Fungi - 79; Plants - 1070; Viruses - 92; Other Eukaryotes - 3594 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G66670-MONOMERBioGrid:28206EC:3.4.21.92eggNOG:COG0740eggNOG:KOG0840EMBL:AB022328EMBL:AC013288
EMBL:AC079285EMBL:AF032123EMBL:AF370528EMBL:AY072526EMBL:AY087349EMBL:CP002684EnsemblPlants:AT1G66670
EnsemblPlants:AT1G66670.1entrez:842985Gene3D:3.90.226.10GeneID:842985Genevisible:Q9SXJ6GO:GO:0004252GO:GO:0009507
GO:GO:0009532GO:GO:0009534GO:GO:0009570GO:GO:0009840GO:GO:0009941Gramene:AT1G66670.1HAMAP:MF_00444
hmmpanther:PTHR10381hmmpanther:PTHR10381:SF20HOGENOM:HOG000285833InParanoid:Q9SXJ6IntAct:Q9SXJ6InterPro:IPR001907InterPro:IPR018215
InterPro:IPR023562InterPro:IPR029045InterPro:IPR033135iPTMnet:Q9SXJ6KEGG:ath:AT1G66670KO:K01358MEROPS:S14.A03
OMA:DAMKQCKPANTHER:PTHR10381PaxDb:Q9SXJ6PDB:1R90PDBsum:1R90Pfam:PF00574Pfam:Q9SXJ6
PhylomeDB:Q9SXJ6PIR:T52041PIR:T52453PRIDE:Q9SXJ6PRINTS:PR00127PRO:PR:Q9SXJ6PROSITE:PS00381
PROSITE:PS00382ProteinModelPortal:Q9SXJ6Proteomes:UP000006548RefSeq:NP_564880.1scanprosite:PS00381scanprosite:PS00382SMR:Q9SXJ6
STRING:3702.AT1G66670.1SUPFAM:SSF52096TAIR:AT1G66670tair10-symbols:CLPP3tair10-symbols:NCLPP3UniGene:At.21167UniProt:Q9SXJ6
Coordinates (TAIR10) chr1:-:24863995..24865646
Molecular Weight (calculated) 33926.80 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.31
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMSLRLASS STSNPICLLN PGKNLNFPIR NHRIPKTSKP FCVRSSMSLS KPPRQTLSSN WDVSSFSIDS VAQSPSRLPS FEELDTTNML LRQRIVFLGS
101: QVDDMTADLV ISQLLLLDAE DSERDITLFI NSPGGSITAG MGIYDAMKQC KADVSTVCLG LAASMGAFLL ASGSKGKRYC MPNSKVMIHQ PLGTAGGKAT
201: EMSIRIREMM YHKIKLNKIF SRITGKPESE IESDTDRDNF LNPWEAKEYG LIDAVIDDGK PGLIAPIGDG TPPPKTKVWD LWKVEGTKKD NTNLPSERSM
301: TQNGYAAIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)