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AT1G66530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.558
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arginyl-tRNA synthetase, class Ic
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Arginyl-tRNA synthetase, class Ic; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT4G26300.1); Has 9450 Blast hits to 9344 proteins in 2861 species: Archae - 249; Bacteria - 5610; Metazoa - 270; Fungi - 189; Plants - 83; Viruses - 3; Other Eukaryotes - 3046 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G66530-MONOMEREC:6.1.1.19eggNOG:COG0018eggNOG:KOG4426
EMBL:AC074025EMBL:AF375433EMBL:AY093956EMBL:CP002684
EMBL:Z98759EnsemblPlants:AT1G66530EnsemblPlants:AT1G66530.1entrez:842971
Gene3D:1.10.730.10Gene3D:3.30.1360.70Gene3D:3.40.50.620GeneID:842971
Genevisible:Q9C713GO:GO:0004814GO:GO:0005524GO:GO:0005829
GO:GO:0006420Gramene:AT1G66530.1gramene_pathway:6.1.1.19gramene_pathway:TRNA-CHARGING-PWY
HAMAP:MF_00123hmmpanther:PTHR11956hmmpanther:PTHR11956:SF5HOGENOM:HOG000247212
InterPro:IPR001278InterPro:IPR001412InterPro:IPR005148InterPro:IPR008909
InterPro:IPR009080InterPro:IPR014729KEGG:00970+6.1.1.19KEGG:ath:AT1G66530
KO:K01887OMA:CAFTEFYPANTHER:PTHR11956PaxDb:Q9C713
Pfam:PF00750Pfam:PF03485Pfam:PF05746PhylomeDB:Q9C713
PIR:A96691PRINTS:PR01038PRO:PR:Q9C713PROSITE:PS00178
ProteinModelPortal:Q9C713Proteomes:UP000006548RefSeq:NP_176826.1scanprosite:PS00178
SMART:SM00836SMART:SM01016SMR:Q9C713STRING:3702.AT1G66530.1
SUPFAM:SSF47323SUPFAM:SSF52374SUPFAM:SSF55190TAIR:AT1G66530
TIGRfam:TIGR00456TIGRFAMs:TIGR00456UniGene:At.42986UniProt:Q9C713
Coordinates (TAIR10) chr1:-:24819064..24822277
Molecular Weight (calculated) 66449.80 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.21
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MATIVASKEF TGNPRRQLAK LFDVSLKLTV PDEPNVEPLI EPGKFGDYQC NNAMGLWSLI KGKGTQFRGP PAVGQALIQS LPTSEMVESC SIAGPGFVNV
101: VLSSKWMAKS IENMLVDGID TWAPTLSVKR AVVDFSSPNI AKEMHVGHLR STIIGDTLAR MLEYSKVEVL RRNHVGDWGT QFGMLIEFLF EKFPDTESVT
201: ETAIGDLQVF YRESKLKFDL NPEFKEKAQQ AVVRLQGGDP VYRQAWAKIC EISRNEFAKV YKRLRIELEE KGESFYNPYI ANVIEELSSK GLVEESKGAR
301: VIFIEGFKIP LIVVKSDGGF NYASTDLTAL WYRLNEEKAE WIIYVTDVGQ QQHFDMFFKA ARKAGWLPDD DKTYPRVSHV GFGLVLGDDN KRFRTRAAEV
401: VRLADLLDEA KDRSKAALIE RGKDKEWSPE ELDQIAEAVG YGALKYADLK TNRITGYTFS FDQMLNDKGD TAVYLLYAHA RICSIIRKSG KDIDELKKTG
501: KIALDHAAER ALGLHLLQFA ETVEEACTTL LPNVLCKYLY YLSEEFTKFY SNCQVNGSAE ETSRLLLCEA TAIVMRKCFH LLGITPVYKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)