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AT1G66390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myb domain protein 90
Curator
Summary (TAIR10)
production of anthocyanin pigment 2 protein (PAP2)
Computational
Description (TAIR10)
myb domain protein 90 (MYB90); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: production of anthocyanin pigment 1 (TAIR:AT1G56650.1); Has 8778 Blast hits to 8175 proteins in 545 species: Archae - 0; Bacteria - 0; Metazoa - 824; Fungi - 456; Plants - 5872; Viruses - 3; Other Eukaryotes - 1623 (source: NCBI BLink).
Protein Annotations
BioGrid:28178eggNOG:COG5147eggNOG:KOG0048EMBL:AC020665EMBL:AF062915EMBL:AF325124EMBL:CP002684
EnsemblPlants:AT1G66390EnsemblPlants:AT1G66390.1entrez:842957Gene3D:1.10.10.60GeneID:842957Genevisible:Q9ZTC3GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0080167Gramene:AT1G66390.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF526HOGENOM:HOG000237600InParanoid:Q9ZTC3IntAct:Q9ZTC3InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT1G66390KO:K09422OMA:NVCENSIPaxDb:Q9ZTC3Pfam:PF00249Pfam:Q9ZTC3Pfscan:PS51294
PhylomeDB:Q9ZTC3PIR:T51687PRIDE:Q9ZTC3PRO:PR:Q9ZTC3PROSITE:PS51294ProteinModelPortal:Q9ZTC3Proteomes:UP000006548
RefSeq:NP_176813.1SMART:SM00717SMR:Q9ZTC3STRING:3702.AT1G66390.1SUPFAM:SSF46689TAIR:AT1G66390tair10-symbols:ATMYB90
tair10-symbols:MYB90tair10-symbols:PAP2UniGene:At.10924UniProt:Q9ZTC3
Coordinates (TAIR10) chr1:+:24764052..24765400
Molecular Weight (calculated) 28101.60 Da
IEP (calculated) 8.49
GRAVY (calculated) -0.61
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGSSKGLRK GAWTAEEDSL LRLCIDKYGE GKWHQVPLRA GLNRCRKSCR LRWLNYLKPS IKRGRLSNDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHESSCCKSK MKKKNIISPP TTPVQKIGVF KPRPRSFSVN NGCSHLNGLP EVDLIPSCLG LKKNNVCENS ITCNKDDEKD DFVNNLMNGD
201: NMWLENLLGE NQEADAIVPE ATTAEHGATL AFDVEQLWSL FDGETVELD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)