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AT1G66330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : senescence-associated family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
senescence-associated family protein; Has 54 Blast hits to 54 proteins in 21 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDZ2eggNOG:ENOG4111KY0EMBL:AC020665EMBL:CP002684EnsemblPlants:AT1G66330EnsemblPlants:AT1G66330.1EnsemblPlants:AT1G66330.2
entrez:842950Gene3D:1.25.10.10GeneID:842950GO:GO:0009507GO:GO:0010150GO:GO:0010228GO:GO:0034599
GO:GO:0072593Gramene:AT1G66330.1Gramene:AT1G66330.2hmmpanther:PTHR36725InterPro:IPR011989KEGG:ath:AT1G66330OMA:IHDMMVN
PhylomeDB:Q9C8Y4PIR:E96688Proteomes:UP000006548RefSeq:NP_564872.1RefSeq:NP_974095.1STRING:3702.AT1G66330.1TAIR:AT1G66330
UniGene:At.18041UniProt:Q9C8Y4
Coordinates (TAIR10) chr1:-:24729880..24732144
Molecular Weight (calculated) 45863.40 Da
IEP (calculated) 5.41
GRAVY (calculated) -0.35
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MALNVSKVVP NSPILVKSVN ASRSRRVLLA YVHHPLAANK GSSIEELKQG LCCTKTVTFV SSRRCSTLCF VGKSQDTETN SQVVQKEGEK QVMPRRKSSN
101: SSQLLVEYVS NDAKFVNERA RNDFVLLSRG IMRLDARARQ DVAILGSGFL KLDARAREDT EKIDRDVKRK AERLHHIATI FKNIAESKLK NAADKHWSDG
201: ALEADLRRAD FRAKQRAMED ALMALEFIKN IHDMMVNKMV DSLVTSETGT TDRISLEKNG IALGFFPGEV SSDRISAIEE AYKSMASALS EADGIDYTDP
301: EELELLVTTL IDLDAMDGKS SASLLAECSS SPDVNTRKAL ANALAAAPSM WTLGNAGMGA LQRLAEDSNP AIAAAASRAI NALKKQWEVE EGDSLRFMMN
401: FERPNDDDDV DSDLDEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)