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AT1G66230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 20
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB20).
Computational
Description (TAIR10)
myb domain protein 20 (MYB20); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 43 (TAIR:AT5G16600.1); Has 8410 Blast hits to 7811 proteins in 453 species: Archae - 0; Bacteria - 0; Metazoa - 663; Fungi - 296; Plants - 5767; Viruses - 4; Other Eukaryotes - 1680 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AC066691EMBL:AY519565EMBL:BT028904EMBL:CP002684EnsemblPlants:AT1G66230
EnsemblPlants:AT1G66230.1entrez:842938Gene3D:1.10.10.60GeneID:842938GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:2000652Gramene:AT1G66230.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF498HOGENOM:HOG000237600InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G66230KO:K09422OMA:THKPLSIPfam:PF00249Pfscan:PS51294
PhylomeDB:Q9C7U7PIR:C96687PIR:T52282PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_176797.1SMART:SM00717
SMR:Q9C7U7STRING:3702.AT1G66230.1SUPFAM:SSF46689TAIR:AT1G66230tair10-symbols:AtMYB20tair10-symbols:MYB20UniGene:At.10901
UniProt:Q9C7U7
Coordinates (TAIR10) chr1:+:24677322..24678246
Molecular Weight (calculated) 32338.10 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.69
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRQPCCDKV GLKKGPWTAE EDRKLINFIL TNGQCCWRAV PKLSGLLRCG KSCRLRWTNY LRPDLKRGLL SDYEEKMVID LHSQLGNRWS KIASHLPGRT
101: DNEIKNHWNT HIKKKLRKMG IDPLTHKPLS IVEKEDEEPL KKLQNNTVPF QETMERPLEN NIKNISRLEE SLGDDQFMEI NLEYGVEDVP LIETESLDLI
201: CSNSTMSSST STSSHSSNDS SFLKDLQFPE FEWSDYGNSN NDNNNGVDNI IENNMMSLWE ISDFSSLDLL LNDESSSTFG LF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)