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AT1G66200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamine synthase clone F11
Curator
Summary (TAIR10)
encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium
Computational
Description (TAIR10)
glutamine synthase clone F11 (GSR2); FUNCTIONS IN: glutamate-ammonia ligase activity, copper ion binding; INVOLVED IN: nitrate assimilation, response to fructose stimulus, response to salt stress, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: cytosol, cytosolic ribosome, apoplast, vacuole, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthase clone R1 (TAIR:AT5G37600.1); Has 11094 Blast hits to 11090 proteins in 3405 species: Archae - 162; Bacteria - 5924; Metazoa - 440; Fungi - 257; Plants - 1757; Viruses - 3; Other Eukaryotes - 2551 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-852-MONOMERBioCyc:ARA:GQT-853-MONOMERBioGrid:28156DNASU:842935EC:6.3.1.2eggNOG:COG0174eggNOG:KOG0683
EMBL:AC026480EMBL:AY086653EMBL:AY091101EMBL:AY122962EMBL:CP002684EnsemblPlants:AT1G66200EnsemblPlants:AT1G66200.1
entrez:842935ExpressionAtlas:Q8LCE1Gene3D:3.30.590.10GeneID:842935Genevisible:Q8LCE1GO:GO:0004356GO:GO:0005524
GO:GO:0005737GO:GO:0006542GO:GO:0009399hmmpanther:PTHR20852hmmpanther:PTHR20852:SF59HOGENOM:HOG000061500InParanoid:Q8LCE1
IntAct:Q8LCE1InterPro:IPR008146InterPro:IPR008147InterPro:IPR014746InterPro:IPR027302InterPro:IPR027303iPTMnet:Q8LCE1
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2PaxDb:Q8LCE1Pfam:PF00120Pfam:PF03951
Pfam:Q8LCE1PhylomeDB:Q8LCE1PIR:H96686PIR:S18602PRIDE:Q8LCE1PRO:PR:Q8LCE1PROSITE:PS00180
PROSITE:PS00181ProteinModelPortal:Q8LCE1Proteomes:UP000006548Reactome:R-ATH-210455Reactome:R-ATH-70614RefSeq:NP_176794.1SABIO-RK:Q8LCE1
scanprosite:PS00180scanprosite:PS00181SMART:SM01230SMR:Q8LCE1STRING:3702.AT1G66200.3SUPFAM:SSF54368SUPFAM:SSF55931
TAIR:AT1G66200tair10-symbols:ATGSR2tair10-symbols:GLN1;2tair10-symbols:GSR2UniGene:At.47484UniGene:At.74857UniProt:Q8LCE1
Coordinates (TAIR10) chr1:-:24655520..24657520
Molecular Weight (calculated) 39209.20 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.39
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLLADLVNL DISDNSEKII AEYIWVGGSG MDMRSKARTL PGPVTDPSKL PKWNYDGSST GQAPGQDSEV ILYPQAIFKD PFRRGNNILV MCDAYTPAGE
101: PIPTNKRHAA AEIFANPDVI AEVPWYGIEQ EYTLLQKDVN WPLGWPIGGF PGPQGPYYCS IGADKSFGRD IVDAHYKASL YAGINISGIN GEVMPGQWEF
201: QVGPSVGISA ADEIWIARYI LERITEIAGV VVSFDPKPIP GDWNGAGAHT NYSTKSMREE GGYEIIKKAI EKLGLRHKEH ISAYGEGNER RLTGHHETAD
301: INTFLWGVAN RGASIRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TLLWNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)