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AT1G66100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant thionin
Curator
Summary (TAIR10)
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.
Computational
Description (TAIR10)
Plant thionin; FUNCTIONS IN: toxin receptor binding; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Thionin (InterPro:IPR001010); BEST Arabidopsis thaliana protein match is: thionin 2.2 (TAIR:AT5G36910.1); Has 206 Blast hits to 206 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JGG2eggNOG:ENOG410YY3SEMBL:AC026480EMBL:AF380652EMBL:AY054154EMBL:CP002684EnsemblPlants:AT1G66100
EnsemblPlants:AT1G66100.1entrez:842924Gene3D:3.30.1350.10GeneID:842924Genevisible:Q9C8D6GO:GO:0005576GO:GO:0006952
Gramene:AT1G66100.1hmmpanther:PTHR33920hmmpanther:PTHR33920:SF1HOGENOM:HOG000241884InParanoid:Q9C8D6InterPro:IPR001010KEGG:ath:AT1G66100
OMA:DANICCPPaxDb:Q9C8D6Pfam:PF00321Pfam:Q9C8D6PhylomeDB:Q9C8D6PIR:F96685PRIDE:Q9C8D6
PRINTS:PR00287PRO:PR:Q9C8D6PROSITE:PS00271ProteinModelPortal:Q9C8D6Proteomes:UP000006548RefSeq:NP_176784.1scanprosite:PS00271
SMR:Q9C8D6STRING:3702.AT1G66100.1SUPFAM:SSF57429TAIR:AT1G66100UniGene:At.17573UniProt:Q9C8D6
Coordinates (TAIR10) chr1:-:24605876..24606473
Molecular Weight (calculated) 14147.90 Da
IEP (calculated) 4.12
GRAVY (calculated) 0.25
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKTLIVSV LIMSLFMAQN QVDANICCPS IQARTFYNAC LFAVGSPSSC IRNSSCLDIS ESTCPRGYTN DILENTGDAV TEYCKLGCVS SVCGALTILQ
101: NSDASEIVNG EVEKCTMACS TVCTKGSMNA VENA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)